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    1500009L16Rik RIKEN cDNA 1500009L16 gene [ Mus musculus (house mouse) ]

    Gene ID: 69784, updated on 30-Apr-2024

    Summary

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    Official Symbol
    1500009L16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1500009L16 geneprovided by MGI
    Primary source
    MGI:MGI:1917034
    See related
    Ensembl:ENSMUSG00000087651 AllianceGenome:MGI:1917034
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    OCC-1; 2700050C19Rik
    Summary
    Orthologous to human C12orf75 (chromosome 12 open reading frame 75). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in placenta adult (RPKM 17.7), CNS E18 (RPKM 12.6) and 15 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1500009L16Rik in Genome Data Viewer
    Location:
    10 C1; 10 41.3 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (83558560..83598626)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (83722693..83762762)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 4 Neighboring gene adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 Neighboring gene STARR-seq mESC enhancer starr_27397 Neighboring gene STARR-seq mESC enhancer starr_27398 Neighboring gene STARR-seq mESC enhancer starr_27399 Neighboring gene STARR-seq mESC enhancer starr_27401 Neighboring gene STARR-seq mESC enhancer starr_27402 Neighboring gene STARR-seq mESC enhancer starr_27403 Neighboring gene STARR-seq mESC enhancer starr_27404 Neighboring gene predicted gene, 33919 Neighboring gene predicted gene, 33980

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    overexpressed in colon carcinoma 1 protein homolog
    Names
    Putative overexpressed in colon carcinoma 1 protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145198.1 → NP_001138670.1  overexpressed in colon carcinoma 1 protein homolog

      See identical proteins and their annotated locations for NP_001138670.1

      Status: VALIDATED

      Source sequence(s)
      BC048550, CD776925, CO044092
      Consensus CDS
      CCDS48656.1
      UniProtKB/Swiss-Prot
      P0C913
      Related
      ENSMUSP00000129542.2, ENSMUST00000150459.3
      Conserved Domains (1) summary
      pfam15506
      Location:1 → 62
      OCC1; OCC1 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      83558560..83598626
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011243557.4 → XP_011241859.1  overexpressed in colon carcinoma 1 protein homolog isoform X1

      Conserved Domains (1) summary
      pfam15506
      Location:92 → 134
      OCC1; OCC1 family

    2. XM_011243558.4 → XP_011241860.1  overexpressed in colon carcinoma 1 protein homolog isoform X2

      Conserved Domains (1) summary
      pfam15506
      Location:92 → 134
      OCC1; OCC1 family

    3. XM_006514060.5 → XP_006514123.1  overexpressed in colon carcinoma 1 protein homolog isoform X3

      Related
      ENSMUSP00000151432.2, ENSMUST00000218623.2
      Conserved Domains (1) summary
      pfam15506
      Location:1 → 62
      OCC1; OCC1 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C913.1 GenPept UniProtKB/Swiss-Prot:P0C913

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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