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    GOLGA2P5 GOLGA2 pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 55592, updated on 10-Oct-2023

    Summary

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    Official Symbol
    GOLGA2P5provided by HGNC
    Official Full Name
    GOLGA2 pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:25315
    See related
    Ensembl:ENSG00000290571 AllianceGenome:HGNC:25315
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GOLGA2B; GOLGA2L1
    Summary
    Predicted to be involved in Golgi organization and spindle assembly. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in testis (RPKM 4.5), duodenum (RPKM 2.8) and 24 other tissues See more
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    Genomic context

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    See GOLGA2P5 in Genome Data Viewer
    Location:
    12q23.1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (100156391..100173343, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (100117626..100134578, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (100550169..100567121, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:100536197-100536960 Neighboring gene BLTP3B divergent transcript Neighboring gene NANOG hESC enhancer GRCh37_chr12:100540373-100541181 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100546825-100547326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100550146-100551035 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100551036-100551924 Neighboring gene dynamin 1 pseudogene 19 Neighboring gene RNA, 7SL, cytoplasmic 176, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:100556980-100557712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100559806-100560306 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6853 Neighboring gene microRNA 1827 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4764 Neighboring gene Sharpr-MPRA regulatory region 7946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6854 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:100595701-100596388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100596389-100597074 Neighboring gene actin related protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A synthetic interaction screen identifies factors selectively required for proliferation and TERT transcription in p53-deficient human cancer cells. Xie L, et al. PLoS Genet, 2012. PMID 23284306, Free PMC Article
    2. DCAF8, a novel MuRF1 interaction partner, promotes muscle atrophy. Nowak M, et al. J Cell Sci, 2019 Sep 6. PMID 31391242
    3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article
    4. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
    5. Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Haenig C, et al. Cell Rep, 2020 Aug 18. PMID 32814053

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • golgi autoantigen, golgin subfamily a, 2-like 1
    • golgin A2 family, member B
    • golgin A2 pseudogene 5
    • golgin A2-like 1
    • golgin subfamily A member 2B

    Clone Names

    • DKFZp434A0411, DKFZp434K1926, DKFZp434M0331

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024261.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains different exon structure in the 3' region, compared to variant 1. Additional exon structure may be present in the 5' region, but the 5' exon structure cannot be determined due to lack of 5'-complete transcript support for this variant, and the presence of ambiguous splicing among other 5' end transcripts.
      Source sequence(s)
      AL137680, BC048272, BQ366018
      Related
      ENST00000421840.2

    2. NR_036632.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript. Additional exon structure may be present in the 5' region, but the 5' exon structure cannot be determined due to lack of 5'-complete transcript support for this variant, and the presence of ambiguous splicing among other 5' end transcripts.
      Source sequence(s)
      AF217995, BQ366018, BX647364
      Related
      ENST00000397112.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      100156391..100173343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      100117626..100134578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_017600.1: Suppressed sequence

      Description
      NM_017600.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9HBQ8.1 GenPept UniProtKB/Swiss-Prot:Q9HBQ8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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