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    LINC03014 long intergenic non-protein coding RNA 3014 [ Homo sapiens (human) ]

    Gene ID: 100507642, updated on 8-Nov-2023

    Summary

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    Official Symbol
    LINC03014provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3014provided by HGNC
    Primary source
    HGNC:HGNC:56142
    See related
    Ensembl:ENSG00000240859
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in kidney (RPKM 1.5), gall bladder (RPKM 1.3) and 24 other tissues See more
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    Genomic context

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    See LINC03014 in Genome Data Viewer
    Location:
    7p22.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (149718..155465)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (250381..256128)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (149718..155465)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375114 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:119835-120053 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:133814-134316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:134317-134819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:139089-139857 Neighboring gene long intergenic non-protein coding RNA 3015 Neighboring gene Sharpr-MPRA regulatory region 13780 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:159391-160174 Neighboring gene TRIO and F-actin-binding protein-like Neighboring gene uncharacterized LOC105375115 Neighboring gene uncharacterized LOC124901806

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC093627.10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108064.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC093627, BF512217, DB179823

    2. NR_108065.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon and is shorter compared to variant 1.
      Source sequence(s)
      AC093627, BF512217, DA923216
      Related
      ENST00000664368.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      149718..155465
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021159998.1 Reference GRCh38.p14 PATCHES

      Range
      125406..131153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187558.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      105523..111270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187653.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      142039..147786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      250381..256128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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