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    LINC00544 long intergenic non-protein coding RNA 544 [ Homo sapiens (human) ]

    Gene ID: 440131, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC00544provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 544provided by HGNC
    Primary source
    HGNC:HGNC:43679
    See related
    AllianceGenome:HGNC:43679
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00544 in Genome Data Viewer
    Location:
    13q12.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (29936531..29950488)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29159146..29173078)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (30510668..30524625)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 297 Neighboring gene long intergenic non-protein coding RNA 572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7529 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:30537636-30538545 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:30538546-30539454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30591649-30592150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30592151-30592650 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:30619407-30619908 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:30619909-30620408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30651921-30652424 Neighboring gene long intergenic non-protein coding RNA 365 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7530 Neighboring gene long intergenic non-protein coding RNA 384

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Long non-coding RNA00544 serves as a potential novel predictive and prognostic marker for HR+ HER2- subtype breast cancer. Liu L, et al. Sci Rep, 2017 Sep 28. PMID 28959047, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033889.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI026706, BC132810, BX118434

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      29936531..29950488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      29159146..29173078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001010918.1: Suppressed sequence

      Description
      NM_001010918.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.

    2. NM_001099778.1: Suppressed sequence

      Description
      NM_001099778.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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