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    C16orf82 chromosome 16 open reading frame 82 [ Homo sapiens (human) ]

    Gene ID: 162083, updated on 5-Mar-2024

    Summary

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    Official Symbol
    C16orf82provided by HGNC
    Official Full Name
    chromosome 16 open reading frame 82provided by HGNC
    Primary source
    HGNC:HGNC:30755
    See related
    Ensembl:ENSG00000234186 AllianceGenome:HGNC:30755
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TNT
    Orthologs
    all
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    Genomic context

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    See C16orf82 in Genome Data Viewer
    Location:
    16p12.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (27066927..27069166)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (27343670..27345909)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (27078248..27080487)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371153 Neighboring gene uncharacterized LOC105371154 Neighboring gene MPRA-validated peak2534 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:27121316-27121864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:27121865-27122411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10609 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 38 Neighboring gene uncharacterized LOC105371155

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ18616

    General protein information

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    Preferred Names
    protein TNT

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145545.2 → NP_001139017.1  protein TNT

      Status: VALIDATED

      Source sequence(s)
      AC092725
      UniProtKB/TrEMBL
      A0A5F9ZHF3
      Related
      ENSP00000500329.2, ENST00000505035.3
      Conserved Domains (1) summary
      pfam15765
      Location:1 → 153
      DUF4694; Domain of unknown function (DUF4694)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      27066927..27069166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      27343670..27345909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_182831.1: Suppressed sequence

      Description
      NM_182831.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7Z2V1.1 GenPept UniProtKB/Swiss-Prot:Q7Z2V1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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