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    Tex13c1 TEX13 family member C1 [ Mus musculus (house mouse) ]

    Gene ID: 637093, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tex13c1provided by MGI
    Official Full Name
    TEX13 family member C1provided by MGI
    Primary source
    MGI:MGI:2685208
    See related
    Ensembl:ENSMUSG00000078320 AllianceGenome:MGI:2685208
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm362; Tex13c
    Summary
    Orthologous to human TEX13C (TEX13 family member C). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 5.6) See more
    Orthologs
    human all
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    Genomic context

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    See Tex13c1 in Genome Data Viewer
    Location:
    X A4; X 23.58 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (42679866..42682407)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (43590989..43593530)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene teneurin transmembrane protein 1 Neighboring gene predicted gene, 24763 Neighboring gene STARR-seq mESC enhancer starr_47072 Neighboring gene STARR-seq mESC enhancer starr_47073 Neighboring gene STARR-seq mESC enhancer starr_47075 Neighboring gene predicted gene 14579 Neighboring gene STARR-seq mESC enhancer starr_47076 Neighboring gene STARR-seq mESC enhancer starr_47077 Neighboring gene STARR-seq mESC enhancer starr_47078 Neighboring gene STARR-seq mESC enhancer starr_47079 Neighboring gene DDB1 and CUL4 associated factor 12-like 2 Neighboring gene crumbs homolog 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 13C-1
    Names
    TEX13 family member C-1
    testis-expressed protein 13C
    testis-expressed sequence 13C protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195271.1 → NP_001182200.1  testis-expressed protein 13C-1

      Status: PROVISIONAL

      Source sequence(s)
      AL671890
      Consensus CDS
      CCDS72373.1
      UniProtKB/Swiss-Prot
      D3YU32
      Related
      ENSMUSP00000100745.3, ENSMUST00000105113.4
      Conserved Domains (1) summary
      pfam15186
      Location:5 → 148
      TEX13; Testis-expressed sequence 13 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      42679866..42682407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D3YU32.1 GenPept UniProtKB/Swiss-Prot:D3YU32

    Gene LinkOut

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