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    LINC01599 long intergenic non-protein coding RNA 1599 [ Homo sapiens (human) ]

    Gene ID: 196913, updated on 5-Mar-2024

    Summary

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    Official Symbol
    LINC01599provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1599provided by HGNC
    Primary source
    HGNC:HGNC:27285
    See related
    Ensembl:ENSG00000214900 AllianceGenome:HGNC:27285
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C14orf183
    Expression
    Broad expression in lymph node (RPKM 1.3), spleen (RPKM 0.9) and 16 other tissues See more
    Orthologs
    all
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    Genomic context

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    See LINC01599 in Genome Data Viewer
    Location:
    14q21.3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (50007313..50105043, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (44212500..44311279, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (50474031..50571761, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 12300 Neighboring gene uncharacterized LOC105370485 Neighboring gene Sharpr-MPRA regulatory region 3168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8333 Neighboring gene microRNA 6076 Neighboring gene long intergenic non-protein coding RNA 1588 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:50466821-50467468 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8334 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8335 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8336 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:50469816-50470329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:50476076-50476576 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5716 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:50492644-50492860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5717 Neighboring gene Sharpr-MPRA regulatory region 12952 Neighboring gene Sharpr-MPRA regulatory region 10345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8342 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8341 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8343 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8345 Neighboring gene PDZ and LIM domain 1 pseudogene 1 Neighboring gene ribosomal protein S15a pseudogene 2 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr14:50541160-50541705 Neighboring gene RN7SK pseudogene 193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8346 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8347 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8348 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8349 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:50550650-50551156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8353 Neighboring gene valosin containing protein lysine methyltransferase Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:50605652-50606356 Neighboring gene SOS Ras/Rho guanine nucleotide exchange factor 2 Neighboring gene NANOG hESC enhancer GRCh37_chr14:50692526-50693052 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8354 Neighboring gene MPRA-validated peak2154 silencer Neighboring gene L-2-hydroxyglutarate dehydrogenase Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:50766206-50766899 Neighboring gene microRNA 4504

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. Luo J, et al. Cell, 2009 May 29. PMID 19490893, Free PMC Article
    2. Impaired plasma membrane localization of ubiquitin ligase complex underlies 3-M syndrome development. Wang P, et al. J Clin Invest, 2019 Jul 25. PMID 31343991, Free PMC Article
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131171.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL117692, BQ027525, DA935043
      Related
      ENST00000603228.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      50007313..50105043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      44212500..44311279 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001014830.1: Suppressed sequence

      Description
      NM_001014830.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.

    2. NR_102736.1: Suppressed sequence

      Description
      NR_102736.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8WXQ3.1 GenPept UniProtKB/Swiss-Prot:Q8WXQ3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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