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    LINC01571 long intergenic non-protein coding RNA 1571 [ Homo sapiens (human) ]

    Gene ID: 101927364, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC01571provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1571provided by HGNC
    Primary source
    HGNC:HGNC:51384
    See related
    AllianceGenome:HGNC:51384
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in thyroid (RPKM 4.6) and kidney (RPKM 1.7) See more
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    Genomic context

    Location:
    16q12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (51762519..51772646)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (57560353..57570480)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (51796430..51806557)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51685231-51685835 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 like 3 Neighboring gene RN7SK pseudogene 142 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:51738563-51738778 Neighboring gene uncharacterized LOC105371257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51807178-51807678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51807679-51808179 Neighboring gene NANOG hESC enhancer GRCh37_chr16:51888422-51888923 Neighboring gene uncharacterized LOC124903765 Neighboring gene VISTA enhancer hs65 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51987528-51988033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51988034-51988538 Neighboring gene uncharacterized LOC105371259

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110916.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC109600

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      51762519..51772646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      57560353..57570480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)