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    LINC01564 long intergenic non-protein coding RNA 1564 [ Homo sapiens (human) ]

    Gene ID: 101927171, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01564provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1564provided by HGNC
    Primary source
    HGNC:HGNC:51361
    See related
    Ensembl:ENSG00000235899 AllianceGenome:HGNC:51361
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RAMS11; XLOC_005327; TCONS_00011314
    Expression
    Biased expression in gall bladder (RPKM 2.5), liver (RPKM 2.0) and 4 other tissues See more
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    Genomic context

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    See LINC01564 in Genome Data Viewer
    Location:
    6p12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (53628380..53631394)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (53468310..53471324)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (53493178..53496192)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene GCLC antisense RNA 1 Neighboring gene glutamate-cysteine ligase catalytic subunit Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:53407007-53407644 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:53408583-53409324 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:53437832-53438332 Neighboring gene KRT19 interacting long noncoding RNA in hepatocellular carcinoma Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:53480209-53481408 Neighboring gene Sharpr-MPRA regulatory region 10125 Neighboring gene Sharpr-MPRA regulatory region 14005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24700 Neighboring gene Sharpr-MPRA regulatory region 11274 Neighboring gene kelch like family member 31 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:53587553-53587738 Neighboring gene uncharacterized LOC124901334 Neighboring gene NANOG hESC enhancer GRCh37_chr6:53595032-53595549 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:53599001-53600200 Neighboring gene uncharacterized LOC124901333

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Long non-coding RNA RAMS11 promotes metastatic colorectal cancer progression. Silva-Fisher JM, et al. Nat Commun, 2020 May 1. PMID 32358485, Free PMC Article
    2. Long noncoding RNAs as putative biomarkers for prostate cancer detection. Lee B, et al. J Mol Diagn, 2014 Nov. PMID 25307116, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • RNAs Associated with Metastasis 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125841.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL157773
      Related
      ENST00000448327.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      53628380..53631394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      53468310..53471324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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