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    Tmem171 transmembrane protein 171 [ Mus musculus (house mouse) ]

    Gene ID: 380863, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Tmem171provided by MGI
    Official Full Name
    transmembrane protein 171provided by MGI
    Primary source
    MGI:MGI:2685751
    See related
    Ensembl:ENSMUSG00000052485 AllianceGenome:MGI:2685751
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm905
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM171 (transmembrane protein 171). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in colon adult (RPKM 50.4), stomach adult (RPKM 17.5) and 5 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Tmem171 in Genome Data Viewer
    Location:
    13 D1; 13 52.13 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (98822744..98832142, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (98686236..98695654, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene calponin 3, acidic pseudogene Neighboring gene transmembrane protein 174 Neighboring gene predicted gene 9465 Neighboring gene FCH domain only 2 Neighboring gene predicted gene, 34995

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Homology

    Clone Names

    • MGC117733

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 171

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025606.1 → NP_001020777.1  transmembrane protein 171 isoform 2

      See identical proteins and their annotated locations for NP_001020777.1

      Status: VALIDATED

      Source sequence(s)
      BC099490
      Consensus CDS
      CCDS26716.1
      UniProtKB/Swiss-Prot
      Q4KL18
      Related
      ENSMUSP00000070369.8, ENSMUST00000064347.8
      Conserved Domains (1) summary
      pfam15471
      Location:4 → 317
      TMEM171; Transmembrane protein family 171

    2. NM_001373965.1 → NP_001360894.1  transmembrane protein 171 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC131187
      Conserved Domains (1) summary
      pfam15471
      Location:4 → 318
      TMEM171; Transmembrane protein family 171

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      98822744..98832142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011244677.4 → XP_011242979.1  transmembrane protein 171 isoform X1

      See identical proteins and their annotated locations for XP_011242979.1

      Conserved Domains (1) summary
      pfam15471
      Location:4 → 318
      TMEM171; Transmembrane protein family 171

    2. XM_011244676.1 → XP_011242978.1  transmembrane protein 171 isoform X1

      See identical proteins and their annotated locations for XP_011242978.1

      Conserved Domains (1) summary
      pfam15471
      Location:4 → 318
      TMEM171; Transmembrane protein family 171

    3. XM_011244678.1 → XP_011242980.1  transmembrane protein 171 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4KL18.1 GenPept UniProtKB/Swiss-Prot:Q4KL18

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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