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    LINC00667 long intergenic non-protein coding RNA 667 [ Homo sapiens (human) ]

    Gene ID: 339290, updated on 30-Oct-2023

    Summary

    Official Symbol
    LINC00667provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 667provided by HGNC
    Primary source
    HGNC:HGNC:27906
    See related
    Ensembl:ENSG00000263753 AllianceGenome:HGNC:27906
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in duodenum (RPKM 11.0), fat (RPKM 10.5) and 25 other tissues See more
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    Genomic context

    See LINC00667 in Genome Data Viewer
    Location:
    18p11.31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (5238100..5246508)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (5400345..5408774)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (5238099..5246507)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904341 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:5214004-5215203 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13054 Neighboring gene transforming acidic coiled-coil containing protein 3 pseudogene Neighboring gene long intergenic non-protein coding RNA 526 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:5294308-5294995 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:5294996-5295682 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:5296371-5297056 Neighboring gene zinc finger and BTB domain containing 14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13056 Neighboring gene uncharacterized LOC107985144

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Clone Names

    • FLJ32367, DKFZp686I1198

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015389.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001496
      Related
      ENST00000582008.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      5238100..5246508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      5400345..5408774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)