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    LOC101927793 uncharacterized LOC101927793 [ Homo sapiens (human) ]

    Gene ID: 101927793, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101927793
    Gene description
    uncharacterized LOC101927793
    See related
    Ensembl:ENSG00000259881
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in spleen (RPKM 1.3), appendix (RPKM 0.7) and 22 other tissues See more
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    Genomic context

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    Location:
    16q24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (88883515..88887136)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (94953873..94957494)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (88949923..88953544)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene galactosamine (N-acetyl)-6-sulfatase Neighboring gene uncharacterized LOC107983950 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7883 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88930168-88930918 Neighboring gene trafficking protein particle complex subunit 2L Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11373 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:88940900-88941052 Neighboring gene PABPN1 like, cytoplasmic Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:88958623-88959123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:88968733-88969276 Neighboring gene uncharacterized LOC102724632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7884 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:88979538-88979753 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11375 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88989393-88990300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88990301-88991209 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88991210-88992117 Neighboring gene cadmium/zinc-transporting ATPase HMA2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88993027-88993933

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • FLJ31304

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135194.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092384, AK055866, DA641322
      Related
      ENST00000565053.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      88883515..88887136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      94953873..94957494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases