U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Spata21 spermatogenesis associated 21 [ Mus musculus (house mouse) ]

    Gene ID: 329972, updated on 30-Apr-2024

    Summary

    Official Symbol
    Spata21provided by MGI
    Official Full Name
    spermatogenesis associated 21provided by MGI
    Primary source
    MGI:MGI:3607787
    See related
    Ensembl:ENSMUSG00000045004 AllianceGenome:MGI:3607787
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933414G08
    Summary
    Predicted to enable calcium ion binding activity. Orthologous to human SPATA21 (spermatogenesis associated 21). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 217.2) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Spata21 in Genome Data Viewer
    Location:
    4 D3; 4 73.36 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (140815631..140840071)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (141088320..141112760)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene NECAP endocytosis associated 2 Neighboring gene STARR-positive B cell enhancer ABC_E3532 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene SUZ RNA binding domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_11890 Neighboring gene STARR-positive B cell enhancer ABC_E3533 Neighboring gene STARR-positive B cell enhancer ABC_E3534 Neighboring gene F-box protein 42 Neighboring gene STARR-seq mESC enhancer starr_11892

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    spermatogenesis-associated protein 21

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177867.3NP_808535.1  spermatogenesis-associated protein 21

      See identical proteins and their annotated locations for NP_808535.1

      Status: PROVISIONAL

      Source sequence(s)
      AK077155
      Consensus CDS
      CCDS18863.1
      UniProtKB/Swiss-Prot
      Q8BHW6
      Related
      ENSMUSP00000053080.3, ENSMUST00000051907.3
      Conserved Domains (2) summary
      cd00051
      Location:435494
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:432493
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      140815631..140840071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538955.3XP_006539018.1  spermatogenesis-associated protein 21 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:5242
      PHA03247; large tegument protein UL36; Provisional
      cd00051
      Location:442501
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    2. XM_017320268.2XP_017175757.1  spermatogenesis-associated protein 21 isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:5242
      PHA03247; large tegument protein UL36; Provisional
      cd00051
      Location:441500
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...