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    Lipn lipase, family member N [ Mus musculus (house mouse) ]

    Gene ID: 70166, updated on 12-May-2024

    Summary

    Official Symbol
    Lipnprovided by MGI
    Official Full Name
    lipase, family member Nprovided by MGI
    Primary source
    MGI:MGI:1917416
    See related
    Ensembl:ENSMUSG00000024770 AllianceGenome:MGI:1917416
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lipl4; 2210418G03Rik
    Summary
    Predicted to enable hydrolase activity, acting on ester bonds. Predicted to act upstream of or within lipid catabolic process. Predicted to be located in extracellular region. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including brain; exocrine gland; gonad; hemolymphoid system gland; and respiratory system. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 8. Orthologous to human LIPN (lipase family member N). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    Location:
    19 C1; 19 29.32 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (34044458..34063346)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (34067058..34085946)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene lipase, family member K Neighboring gene predicted gene, 31300 Neighboring gene STARR-seq mESC enhancer starr_45988 Neighboring gene STARR-seq mESC enhancer starr_45989 Neighboring gene lipase, family member M Neighboring gene ankyrin repeat domain 22 Neighboring gene STARR-seq mESC enhancer starr_45990 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:34255778-34255996 Neighboring gene STARR-positive B cell enhancer ABC_E5696 Neighboring gene STAM binding protein like 1 Neighboring gene STARR-seq mESC enhancer starr_45992

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    lipase member N
    Names
    lipase-like abhydrolase domain-containing protein 4
    lipase-like, ab-hydrolase domain containing 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027340.2NP_081616.1  lipase member N precursor

      See identical proteins and their annotated locations for NP_081616.1

      Status: PROVISIONAL

      Source sequence(s)
      AK154333
      Consensus CDS
      CCDS37962.1
      UniProtKB/Swiss-Prot
      Q3U4B4
      Related
      ENSMUSP00000025682.6, ENSMUST00000025682.12
      Conserved Domains (1) summary
      PLN02872
      Location:39397
      PLN02872; triacylglycerol lipase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      34044458..34063346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527333.2XP_006527396.1  lipase member N isoform X1

      See identical proteins and their annotated locations for XP_006527396.1

      UniProtKB/Swiss-Prot
      Q3U4B4
      Conserved Domains (1) summary
      PLN02872
      Location:39397
      PLN02872; triacylglycerol lipase