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    D630003M21Rik RIKEN cDNA D630003M21 gene [ Mus musculus (house mouse) ]

    Gene ID: 228846, updated on 5-Mar-2024

    Summary

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    Official Symbol
    D630003M21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D630003M21 geneprovided by MGI
    Primary source
    MGI:MGI:3606579
    See related
    Ensembl:ENSMUSG00000037813 AllianceGenome:MGI:3606579
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human KIAA1755 (KIAA1755). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in limb E14.5 (RPKM 6.4), genital fat pad adult (RPKM 5.4) and 23 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See D630003M21Rik in Genome Data Viewer
    Location:
    2 H1; 2 78.72 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (158024453..158071837, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (158182533..158229929, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene transglutaminase 2, C polypeptide Neighboring gene STARR-seq mESC enhancer starr_06229 Neighboring gene RIKEN cDNA 1700060C20 gene Neighboring gene predicted gene, 34514 Neighboring gene microRNA 7685 Neighboring gene predicted gene, 34571 Neighboring gene bactericidal permeablility increasing protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein KIAA1755 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001131021.2 → NP_001124493.1  uncharacterized protein KIAA1755 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK052605, AK168367, AL663063
      Consensus CDS
      CCDS50785.1
      UniProtKB/TrEMBL
      A2AC60
      Related
      ENSMUSP00000099410.4, ENSMUST00000103121.10
      Conserved Domains (2) summary
      PHA03247
      Location:303 → 646
      PHA03247; large tegument protein UL36; Provisional
      PRK10475
      Location:276 → 357
      PRK10475; 23S rRNA pseudouridine synthase F; Provisional

    2. NM_177657.5 → NP_808325.2  uncharacterized protein KIAA1755 homolog isoform 1

      See identical proteins and their annotated locations for NP_808325.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AI465188, AK052605, AK168367, BC137960
      Consensus CDS
      CCDS16986.1
      UniProtKB/Swiss-Prot
      A2AC61, B2RQJ6, Q8BWG4
      Related
      ENSMUSP00000040546.6, ENSMUST00000046944.6
      Conserved Domains (2) summary
      PHA03247
      Location:303 → 646
      PHA03247; large tegument protein UL36; Provisional
      PRK10475
      Location:276 → 357
      PRK10475; 23S rRNA pseudouridine synthase F; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      158024453..158071837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004940146.1 RNA Sequence

    2. XR_374459.5 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BWG4.2 GenPept UniProtKB/Swiss-Prot:Q8BWG4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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