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    Gphb5 glycoprotein hormone beta 5 [ Mus musculus (house mouse) ]

    Gene ID: 217674, updated on 12-May-2024

    Summary

    Official Symbol
    Gphb5provided by MGI
    Official Full Name
    glycoprotein hormone beta 5provided by MGI
    Primary source
    MGI:MGI:2156540
    See related
    Ensembl:ENSMUSG00000048982 AllianceGenome:MGI:2156540
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    OGH; Zlut1
    Summary
    Predicted to enable protein heterodimerization activity and thyrotropin-releasing hormone receptor binding activity. Acts upstream of or within regulation of thyroid hormone mediated signaling pathway. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Orthologous to human GPHB5 (glycoprotein hormone subunit beta 5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Gphb5 in Genome Data Viewer
    Location:
    12 C3; 12 32.71 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (75458494..75463555, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (75411720..75416781, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_32489 Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 5 Neighboring gene STARR-seq mESC enhancer starr_32490 Neighboring gene ras homolog family member J Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:76492550-76492789 Neighboring gene STARR-seq mESC enhancer starr_32491 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:76550614-76550799 Neighboring gene STARR-seq mESC enhancer starr_32492 Neighboring gene predicted gene, 34613 Neighboring gene protein phosphatase 2, regulatory subunit B', epsilon Neighboring gene STARR-seq mESC enhancer starr_32494 Neighboring gene STARR-seq mESC enhancer starr_32495 Neighboring gene STARR-positive B cell enhancer ABC_E2388 Neighboring gene predicted gene, 34666

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (2)  1 citation

    Pathways from PubChem

    General protein information

    Preferred Names
    glycoprotein hormone beta-5
    Names
    glycoprotein hormone beta subunit
    thyrostimulin subunit beta

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175644.3NP_783575.2  glycoprotein hormone beta-5 precursor

      See identical proteins and their annotated locations for NP_783575.2

      Status: VALIDATED

      Source sequence(s)
      AC124414
      Consensus CDS
      CCDS25982.1
      UniProtKB/Swiss-Prot
      Q812B2, Q8BJV2
      UniProtKB/TrEMBL
      B2RTN6, Q2NL39
      Related
      ENSMUSP00000061488.3, ENSMUST00000051079.4
      Conserved Domains (1) summary
      cd00069
      Location:36129
      GHB_like; Glycoprotein hormone beta chain homologues

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      75458494..75463555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315024.1XP_017170513.1  glycoprotein hormone beta-5 isoform X1

      UniProtKB/Swiss-Prot
      Q812B2, Q8BJV2
      UniProtKB/TrEMBL
      B2RTN6, Q2NL39
      Conserved Domains (1) summary
      cd00069
      Location:36129
      GHB_like; Glycoprotein hormone beta chain homologues