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    ANKRD30BP2 ankyrin repeat domain 30B pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 149992, updated on 10-Oct-2023

    Summary

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    Official Symbol
    ANKRD30BP2provided by HGNC
    Official Full Name
    ankyrin repeat domain 30B pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:16620
    See related
    AllianceGenome:HGNC:16620
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT85; CTSP1; CTSP-1; C21orf99
    Annotation information
    Annotation category: suggests misassembly
    Expression
    Restricted expression toward testis (RPKM 2.6) See more
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    Genomic context

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    See ANKRD30BP2 in Genome Data Viewer
    Location:
    21q11.2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (13038166..13118251)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (11382461..11462603)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (14410487..14490572)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10855487-10856405 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10854560-10855064 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10853405-10854344 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10846505-10847020 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10842671-10843548 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10838130-10838637 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10837621-10838129 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10836528-10837187 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10835867-10836527 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10833885-10834544 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10833223-10833884 Neighboring gene NANOG hESC enhancer GRCh37_chr21:10828675-10829607 Neighboring gene immunoglobulin heavy variable 1/OR21-1 (non-functional) Neighboring gene solute carrier family 25 member 15 pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10806014-10806975 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10804701-10805266 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10805267-10805830 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10806976-10807936 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10809989-10810538 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10798959-10799488 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10795981-10796775 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10795186-10795980 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10794218-10794859 Neighboring gene OCT4-NANOG hESC enhancers GRCh37_chr21:10793041-10793561 and GRCh37_chr21:10793562-10794081 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10792057-10792998 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10791113-10792056 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10790482-10791066 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10789628-10790471 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10788693-10789551 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10785765-10786616 Neighboring gene Sharpr-MPRA regulatory region 7824 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10759655-10760630 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10760631-10761606 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10765276-10765789 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10765790-10766304 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10764761-10765275 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10750231-10750944 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10749518-10750230 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10748804-10749517 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10743796-10744614 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10742976-10743795 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10733773-10734290 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr21:10732737-10733254 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr21:10732217-10732736 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10721357-10721880 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10721881-10722403 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10722404-10722926 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10722927-10723449 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10725560-10726366 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10726367-10727171 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10727172-10727977 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10723450-10723973 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10719264-10719787 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10718741-10719263 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10717694-10718216 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10716647-10717169 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10716124-10716646 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10715601-10716123 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10715077-10715600 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10705779-10706632 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10699388-10700124 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10698652-10699387 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10697915-10698651 Neighboring gene OCT4 hESC enhancer GRCh37_chr21:14353861-14354362 Neighboring gene RNA, U6 small nuclear 614, pseudogene Neighboring gene vomeronasal 1 receptor 109 pseudogene Neighboring gene BNIP3 pseudogene 43 Neighboring gene zinc finger protein 355, pseudogene Neighboring gene fibroblast growth factor 7 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Parmigiani RB, et al. Proc Natl Acad Sci U S A, 2006 Nov 28. PMID 17114284, Free PMC Article
    2. Nineteen additional unpredicted transcripts from human chromosome 21. Reymond A, et al. Genomics, 2002 Jun. PMID 12036297
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • ankyrin repeat domain 30A pseudogene
    • cancer-testis SP-1
    • cancer/testis antigen 85

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026916.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AF427490, AP001464, BC036510, DQ179138, DQ179139, DQ179141

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      13038166..13118251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      11382461..11462603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_153773.1: Suppressed sequence

      Description
      NM_153773.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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