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    LINC01410 long intergenic non-protein coding RNA 1410 [ Homo sapiens (human) ]

    Gene ID: 103352539, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC01410provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1410provided by HGNC
    Primary source
    HGNC:HGNC:50702
    See related
    Ensembl:ENSG00000238113 AllianceGenome:HGNC:50702
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in spleen (RPKM 2.7), bone marrow (RPKM 2.7) and 22 other tissues See more
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    Genomic context

    See LINC01410 in Genome Data Viewer
    Location:
    9q13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (62801465..62813486)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (40764165..40776190)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (66457289..66469310)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene short chain dehydrogenase/reductase family 42E, member 1 pseudogene 3 Neighboring gene FKBP prolyl isomerase 4 pseudogene 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:47049006-47049525 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:47049526-47050044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28431 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66455492-66456238 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66456239-66456984 Neighboring gene uncharacterized LOC107987020 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66457043-66457922 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66457923-66458800 Neighboring gene RNA, 5S ribosomal pseudogene 283 Neighboring gene OCT4 hESC enhancer GRCh37_chr9:66464814-66465421 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66470759-66471281 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66478631-66479190 Neighboring gene PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66486627-66487478 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66489090-66489619 Neighboring gene uncharacterized LOC100132249 Neighboring gene MPRA-validated peak7249 silencer Neighboring gene Sharpr-MPRA regulatory region 15656 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19925 Neighboring gene prostaglandin E receptor 4 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121647.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL512625
      Related
      ENST00000424345.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      62801465..62813486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      40764165..40776190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)