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    LINC02389 long intergenic non-protein coding RNA 2389 [ Homo sapiens (human) ]

    Gene ID: 400046, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02389provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2389provided by HGNC
    Primary source
    HGNC:HGNC:53316
    See related
    Ensembl:ENSG00000255693 AllianceGenome:HGNC:53316
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    12q14.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (64883774..64977522)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (64862788..64956515)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (65277554..65371302)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4626 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4627 Neighboring gene TBC1 domain family member 30 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4628 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:65219125-65219632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6601 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65252401-65252902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65252903-65253402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6603 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65282633-65283275 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65283276-65283917 Neighboring gene ribosomal protein L7 pseudogene 39 Neighboring gene uncharacterized LOC124903125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65325441-65325942 Neighboring gene long intergenic non-protein coding RNA 2231 Neighboring gene RNA, U6atac small nuclear 42, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6604 Neighboring gene uncharacterized LOC107984522 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65386408-65386934 Neighboring gene WNT inhibitory factor 1 Neighboring gene RNA, U6 small nuclear 166, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LINC02389/miR-7-5p Regulated Cisplatin Resistance of Non-Small-Cell Lung Cancer via Promoting Oxidative Stress. Ma P, et al. Anal Cell Pathol (Amst), 2022. PMID 36311891, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LINC02389/miR-7-5p Regulated Cisplatin Resistance of Non-Small-Cell Lung Cancer via Promoting Oxidative Stress.
      Title: LINC02389/miR-7-5p Regulated Cisplatin Resistance of Non-Small-Cell Lung Cancer via Promoting Oxidative Stress.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ41278

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_027727.1 RefSeqGene

      Range
      5001..98749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_033988.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078815, AK123272, BU782746
      Related
      ENST00000535058.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      64883774..64977522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      64862788..64956515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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