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    LINC01789 long intergenic non-protein coding RNA 1789 [ Homo sapiens (human) ]

    Gene ID: 105373536, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC01789provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1789provided by HGNC
    Primary source
    HGNC:HGNC:52578
    See related
    AllianceGenome:HGNC:52578
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01789 in Genome Data Viewer
    Location:
    2q12.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (107254691..107365573, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (107716257..107827087, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 5 Neighboring gene uncharacterized LOC105373535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:107803878-107804378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:107852209-107852853 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:107872612-107872786 Neighboring gene long intergenic non-protein coding RNA 1885 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:108085955-108086455 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:108118620-108119354 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:108119355-108120088 Neighboring gene uncharacterized LOC124905955 Neighboring gene long intergenic non-protein coding RNA 1886 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:108250055-108251254 Neighboring gene uncharacterized LOC105373539

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183814.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006227, AC096669

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      107254691..107365573 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      107716257..107827087 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)