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    LOC100420215 RNA binding motif protein 45 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100420215, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC100420215
    Gene description
    RNA binding motif protein 45 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    8q24.22
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (131712316..131712980)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (132835228..132835896)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (132724563..132725227)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900258 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:132445848-132446391 Neighboring gene uncharacterized LOC105375763 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:132517092-132517279 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:132647081-132647686 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:132647687-132648291 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:132783439-132783966 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:132798484-132799683 Neighboring gene NANOG hESC enhancer GRCh37_chr8:132823618-132824138 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27990 Neighboring gene NANOG hESC enhancer GRCh37_chr8:132832316-132832817 Neighboring gene uncharacterized LOC107986976 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:132868859-132870058 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27991 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19557 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:132964728-132965406 Neighboring gene EFR3 homolog A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_026133.1 

      Range
      101..765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      131712316..131712980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      132835228..132835896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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