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    CST9LP2 cystatin 9-like pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 106480788, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CST9LP2provided by HGNC
    Official Full Name
    cystatin 9-like pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:44337
    See related
    Ensembl:ENSG00000204658 AllianceGenome:HGNC:44337
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTES7D
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    Genomic context

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    Location:
    20p11.21
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (23583645..23586510)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (23643190..23646058)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (23564282..23567147)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene cystatin 9-like pseudogene 1 Neighboring gene cystatin 9 like Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:23570170-23570774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23583003-23583504 Neighboring gene cystatin 9 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:23603438-23603648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12733 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12734 Neighboring gene cystatin C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins. Frygelius J, et al. Evol Dev, 2010 May-Jun. PMID 20565543

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_044076.1 

      Range
      101..2966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      23583645..23586510
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      23643190..23646058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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