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TBC1D27P TBC1 domain family member 27, pseudogene [ Homo sapiens (human) ]

Gene ID: 96597, updated on 5-Mar-2024

Summary

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Official Symbol
TBC1D27Pprovided by HGNC
Official Full Name
TBC1 domain family member 27, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:28104
See related
AllianceGenome:HGNC:28104
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TBC1D27
Expression
Biased expression in spleen (RPKM 5.9), lymph node (RPKM 2.7) and 5 other tissues See more
Orthologs
all
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Genomic context

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Location:
17p11.2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (16922776..16933176, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (16868855..16879255, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (16826090..16836490, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903939 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16773690-16774683 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16774796-16775646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16775647-16776497 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16776498-16777348 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16783154-16783818 Neighboring gene uncharacterized LOC101929105 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16785977-16786476 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47083 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47087 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:16828359-16829044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11772 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11773 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16840494-16840994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16841792-16842632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16846756-16847256 Neighboring gene TNF receptor superfamily member 13B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16847257-16847757 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16847819-16848342 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16848867-16849390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16849391-16849914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11780 Neighboring gene uncharacterized LOC284191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. Hosgood HD 3rd, et al. Occup Environ Med, 2009 Dec. PMID 19773279, Free PMC Article
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Rose JE, et al. Mol Med, 2010 Jul-Aug. PMID 20379614, Free PMC Article
  3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
  2. Observational study of gene-disease association. (HuGE Navigator)
    Title: Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ52819

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147084.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK024458, AL353996

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    16922776..16933176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    16868855..16879255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials