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Trim9 tripartite motif-containing 9 [ Mus musculus (house mouse) ]

Gene ID: 94090, updated on 18-Apr-2024

Summary

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Official Symbol
Trim9provided by MGI
Official Full Name
tripartite motif-containing 9provided by MGI
Primary source
MGI:MGI:2137354
See related
Ensembl:ENSMUSG00000021071 AllianceGenome:MGI:2137354
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable several functions, including SNARE binding activity; protein homodimerization activity; and ubiquitin protein ligase activity. Predicted to be involved in negative regulation of SNARE complex assembly; negative regulation of calcium ion-dependent exocytosis; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination and synaptic vesicle exocytosis. Located in cytoplasm and dendrite. Is expressed in several structures, including alimentary system; limb; nervous system; sensory organ; and urinary system. Orthologous to human TRIM9 (tripartite motif containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in frontal lobe adult (RPKM 15.7), cortex adult (RPKM 12.9) and 5 other tissues See more
Orthologs
human all
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Genomic context

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Location:
12 C2; 12 29.07 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (70291307..70394404, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (70244533..70347869, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_32387 Neighboring gene liver glycogen phosphorylase Neighboring gene RIKEN cDNA F730035M05 gene Neighboring gene STARR-seq mESC enhancer starr_32388 Neighboring gene predicted gene, 38467 Neighboring gene STARR-seq mESC enhancer starr_32389 Neighboring gene predicted gene, 40435 Neighboring gene predicted gene, 51972

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. TRIM9 is specifically expressed in the embryonic and adult nervous system. Berti C, et al. Mech Dev, 2002 May. PMID 11960705
  2. TRIM9-Mediated Resolution of Neuroinflammation Confers Neuroprotection upon Ischemic Stroke in Mice. Zeng J, et al. Cell Rep, 2019 Apr 9. PMID 30970257, Free PMC Article
  3. MicroRNA-653 Inhibits Thymocyte Proliferation and Induces Thymocyte Apoptosis in Mice with Autoimmune Myasthenia Gravis by Downregulating TRIM9. Cao YL, et al. Neuroimmunomodulation, 2019. PMID 30703767
  4. TRIM9, a novel brain-specific E3 ubiquitin ligase, is repressed in the brain of Parkinson's disease and dementia with Lewy bodies. Tanji K, et al. Neurobiol Dis, 2010 May. PMID 20085810, Free PMC Article
  5. A pair of E3 ubiquitin ligases compete to regulate filopodial dynamics and axon guidance. Boyer NP, et al. J Cell Biol, 2020 Jan 6. PMID 31820781, Free PMC Article

See all (38) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The TRIM9/TRIM67 neuronal interactome reveals novel activators of morphogenesis.
    Title: The TRIM9/TRIM67 neuronal interactome reveals novel activators of morphogenesis.
  2. MicroRNA-653 Inhibits Thymocyte Proliferation and Induces Thymocyte Apoptosis in Mice with Autoimmune Myasthenia Gravis by Downregulating TRIM9.
    Title: MicroRNA-653 Inhibits Thymocyte Proliferation and Induces Thymocyte Apoptosis in Mice with Autoimmune Myasthenia Gravis by Downregulating TRIM9.
  3. Findings reveal that TRIM9 is essential for resolving NF-kappaB-dependent neuroinflammation to promote recovery and repair after brain injury.
    Title: TRIM9-Mediated Resolution of Neuroinflammation Confers Neuroprotection upon Ischemic Stroke in Mice.
  4. Authors demonstrate that tripartite motif protein 9 (TRIM9)-dependent ubiquitination of DCC blocks the interaction with and phosphorylation of FAK.
    Title: TRIM9-dependent ubiquitination of DCC constrains kinase signaling, exocytosis, and axon branching.
  5. Adult-born dentate granule cells lacking Trim9 exhibited excessive dendritic arborization and mislocalization of cell bodies in vivo
    Title: Trim9 Deletion Alters the Morphogenesis of Developing and Adult-Born Hippocampal Neurons and Impairs Spatial Learning and Memory.
  6. a gradient of TRIM9-mediated ubiquitination of VASP creates a filopodial stability gradient during axon turning
    Title: The E3 Ubiquitin Ligase TRIM9 Is a Filopodia Off Switch Required for Netrin-Dependent Axon Guidance.
  7. TRIM9 is expressed in the mouse embryonic and adult nervous system
    Title: TRIM9 is specifically expressed in the embryonic and adult nervous system.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Targeted (3)  1 citation

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • mKIAA0282, C030048G07Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables SNARE binding ISO
Inferred from Sequence Orthology
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
  
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity ISO
Inferred from Sequence Orthology
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in negative regulation of SNARE complex assembly ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of calcium ion-dependent exocytosis ISO
Inferred from Sequence Orthology
more info
  
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within synaptic vesicle exocytosis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in dendrite IDA
Inferred from Direct Assay
more info
 PubMed 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
  
is_active_in presynaptic cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  
is_active_in synaptic vesicle ISO
Inferred from Sequence Orthology
more info
  
located_in synaptic vesicle ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM9
Names
RING-type E3 ubiquitin transferase TRIM9
tripartite motif-containing protein 9
NP_001103672.1
NP_001103673.1
NP_001273315.1
NP_001273316.1
NP_001273317.1
NP_001392290.1
NP_001392291.1
NP_001392292.1
NP_001392293.1
NP_001392294.1
NP_001392295.1
NP_001392296.1
NP_001392297.1
NP_001392298.1
NP_001392299.1
NP_001392300.1
NP_001392301.1
NP_001392302.1
NP_001392303.1
NP_001392304.1
NP_001392305.1
NP_001392306.1
NP_001392307.1
NP_001392308.1
NP_001392309.1
NP_001392310.1
NP_001392311.1
NP_001392312.1
NP_001392313.1
NP_001392314.1
NP_001392315.1
NP_001392316.1
NP_444397.2
XP_006516465.1
XP_017170752.1
XP_017170754.1
XP_030102867.1
XP_036013585.1
XP_036013586.1
XP_036013588.1
XP_036013589.1
XP_036013591.1
XP_036013592.1
XP_036013596.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110202.2 → NP_001103672.1  E3 ubiquitin-protein ligase TRIM9 isoform 2

    See identical proteins and their annotated locations for NP_001103672.1

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    Consensus CDS
    CCDS49077.1
    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Related
    ENSMUSP00000106149.3, ENSMUST00000110520.10
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:557 → 704
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  2. NM_001110203.2 → NP_001103673.1  E3 ubiquitin-protein ligase TRIM9 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    Consensus CDS
    CCDS49079.1
    UniProtKB/TrEMBL
    E9Q524
    Related
    ENSMUSP00000127081.2, ENSMUST00000167755.3
    Conserved Domains (4) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl00034
    Location:223 → 271
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:5 → 52
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. NM_001286386.2 → NP_001273315.1  E3 ubiquitin-protein ligase TRIM9 isoform 4

    See identical proteins and their annotated locations for NP_001273315.1

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    Consensus CDS
    CCDS88348.1
    UniProtKB/Swiss-Prot
    Q8C7M3
    Related
    ENSMUSP00000152692.2, ENSMUST00000221370.2
    Conserved Domains (4) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl00034
    Location:223 → 271
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:5 → 52
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  4. NM_001286387.2 → NP_001273316.1  E3 ubiquitin-protein ligase TRIM9 isoform 5

    See identical proteins and their annotated locations for NP_001273316.1

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    UniProtKB/TrEMBL
    A0A1Y7VJX8, Q3TR28
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:630 → 777
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  5. NM_001286388.2 → NP_001273317.1  E3 ubiquitin-protein ligase TRIM9 isoform 6

    See identical proteins and their annotated locations for NP_001273317.1

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:631 → 796
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  6. NM_001405361.1 → NP_001392290.1  E3 ubiquitin-protein ligase TRIM9 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    UniProtKB/Swiss-Prot
    Q6ZQE5, Q80WT6, Q8C7M3, Q8C7Z4, Q8CC32, Q8CEG2, Q99PQ3
    Related
    ENSMUSP00000152147.2, ENSMUST00000222316.2

  7. NM_001405362.1 → NP_001392291.1  E3 ubiquitin-protein ligase TRIM9 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  8. NM_001405363.1 → NP_001392292.1  E3 ubiquitin-protein ligase TRIM9 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  9. NM_001405364.1 → NP_001392293.1  E3 ubiquitin-protein ligase TRIM9 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  10. NM_001405365.1 → NP_001392294.1  E3 ubiquitin-protein ligase TRIM9 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  11. NM_001405366.1 → NP_001392295.1  E3 ubiquitin-protein ligase TRIM9 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  12. NM_001405367.1 → NP_001392296.1  E3 ubiquitin-protein ligase TRIM9 isoform 13

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  13. NM_001405368.1 → NP_001392297.1  E3 ubiquitin-protein ligase TRIM9 isoform 14

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  14. NM_001405369.1 → NP_001392298.1  E3 ubiquitin-protein ligase TRIM9 isoform 15

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  15. NM_001405370.1 → NP_001392299.1  E3 ubiquitin-protein ligase TRIM9 isoform 16

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  16. NM_001405371.1 → NP_001392300.1  E3 ubiquitin-protein ligase TRIM9 isoform 17

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    UniProtKB/TrEMBL
    A0A1Y7VP88
    Related
    ENSMUSP00000152887.2, ENSMUST00000223160.2

  17. NM_001405372.1 → NP_001392301.1  E3 ubiquitin-protein ligase TRIM9 isoform 18

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  18. NM_001405373.1 → NP_001392302.1  E3 ubiquitin-protein ligase TRIM9 isoform 19

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  19. NM_001405374.1 → NP_001392303.1  E3 ubiquitin-protein ligase TRIM9 isoform 20

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  20. NM_001405375.1 → NP_001392304.1  E3 ubiquitin-protein ligase TRIM9 isoform 21

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  21. NM_001405376.1 → NP_001392305.1  E3 ubiquitin-protein ligase TRIM9 isoform 22

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    Related
    ENSMUSP00000152496.2, ENSMUST00000221041.2

  22. NM_001405377.1 → NP_001392306.1  E3 ubiquitin-protein ligase TRIM9 isoform 23

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  23. NM_001405378.1 → NP_001392307.1  E3 ubiquitin-protein ligase TRIM9 isoform 24

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  24. NM_001405379.1 → NP_001392308.1  E3 ubiquitin-protein ligase TRIM9 isoform 25

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    UniProtKB/TrEMBL
    A0A6I8MWZ7

  25. NM_001405380.1 → NP_001392309.1  E3 ubiquitin-protein ligase TRIM9 isoform 25

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    UniProtKB/TrEMBL
    A0A6I8MWZ7
    Related
    ENSMUSP00000159335.2, ENSMUST00000222603.3

  26. NM_001405381.1 → NP_001392310.1  E3 ubiquitin-protein ligase TRIM9 isoform 27

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  27. NM_001405382.1 → NP_001392311.1  E3 ubiquitin-protein ligase TRIM9 isoform 28

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  28. NM_001405383.1 → NP_001392312.1  E3 ubiquitin-protein ligase TRIM9 isoform 29

    Status: VALIDATED

    Source sequence(s)
    AC147241

  29. NM_001405384.1 → NP_001392313.1  E3 ubiquitin-protein ligase TRIM9 isoform 30

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241

  30. NM_001405385.1 → NP_001392314.1  E3 ubiquitin-protein ligase TRIM9 isoform 31

    Status: VALIDATED

    Source sequence(s)
    AC147241

  31. NM_001405386.1 → NP_001392315.1  E3 ubiquitin-protein ligase TRIM9 isoform 32

    Status: VALIDATED

    Source sequence(s)
    AC147241

  32. NM_001405387.1 → NP_001392316.1  E3 ubiquitin-protein ligase TRIM9 isoform 33

    Status: VALIDATED

    Source sequence(s)
    AC147241

  33. NM_053167.4 → NP_444397.2  E3 ubiquitin-protein ligase TRIM9 isoform 1

    See identical proteins and their annotated locations for NP_444397.2

    Status: VALIDATED

    Source sequence(s)
    AC124733, AC147241
    Consensus CDS
    CCDS49078.1
    UniProtKB/TrEMBL
    A0A1Y7VJX8, E9QLH4
    Related
    ENSMUSP00000106151.3, ENSMUST00000110522.10
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:631 → 778
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    70291307..70394404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157695.1 → XP_036013588.1  E3 ubiquitin-protein ligase TRIM9 isoform X14

    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:529 → 690
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  2. XM_030247007.2 → XP_030102867.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:620 → 767
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  3. XM_006516402.5 → XP_006516465.1  E3 ubiquitin-protein ligase TRIM9 isoform X8

    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:567 → 732
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  4. XM_036157693.1 → XP_036013586.1  E3 ubiquitin-protein ligase TRIM9 isoform X9

    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:560 → 725
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  5. XM_017315265.3 → XP_017170754.1  E3 ubiquitin-protein ligase TRIM9 isoform X7

    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:568 → 733
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  6. XM_017315263.3 → XP_017170752.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:623 → 788
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  7. XM_036157692.1 → XP_036013585.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    UniProtKB/TrEMBL
    A0A1Y7VJX8
    Conserved Domains (6) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:631 → 786
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223 → 271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166 → 212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  8. XM_036157696.1 → XP_036013589.1  E3 ubiquitin-protein ligase TRIM9 isoform X17

    Conserved Domains (3) summary
    smart00502
    Location:27 → 150
    BBC; B-Box C-terminal domain
    cd00063
    Location:204 → 283
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:382 → 547
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

  9. XM_036157699.1 → XP_036013592.1  E3 ubiquitin-protein ligase TRIM9 isoform X20

    Conserved Domains (3) summary
    smart00502
    Location:1 → 99
    BBC; B-Box C-terminal domain
    cd00063
    Location:153 → 232
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:331 → 496
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

  10. XM_036157703.1 → XP_036013596.1  E3 ubiquitin-protein ligase TRIM9 isoform X23

    Conserved Domains (3) summary
    smart00502
    Location:1 → 99
    BBC; B-Box C-terminal domain
    cd00063
    Location:153 → 232
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:229 → 396
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

  11. XM_036157698.1 → XP_036013591.1  E3 ubiquitin-protein ligase TRIM9 isoform X18

    UniProtKB/TrEMBL
    A0A6I8MWZ7
    Conserved Domains (5) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:10 → 49
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:223 → 271
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:5 → 52
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

RNA

  1. XR_381560.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C7M3.2 GenPept UniProtKB/Swiss-Prot:Q8C7M3

Gene LinkOut

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