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TRIP12 thyroid hormone receptor interactor 12 [ Homo sapiens (human) ]

Gene ID: 9320, updated on 7-Apr-2024

Summary

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Official Symbol
TRIP12provided by HGNC
Official Full Name
thyroid hormone receptor interactor 12provided by HGNC
Primary source
HGNC:HGNC:12306
See related
Ensembl:ENSG00000153827 MIM:604506; AllianceGenome:HGNC:12306
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ULF; MRD49; TRIPC; TRIP-12
Summary
The protein encoded by this gene is an E3 ubiquitin-protein ligase involved in the degradation of the p19ARF/ARF isoform of CDKN2A, a tumor suppressor. The encoded protein also plays a role in the DNA damage response by regulating the stability of USP7, which regulates tumor suppressor p53. [provided by RefSeq, Jan 2017]
Expression
Broad expression in testis (RPKM 48.5), thyroid (RPKM 17.6) and 24 other tissues See more
Orthologs
mouse all
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Genomic context

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See TRIP12 in Genome Data Viewer
Location:
2q36.3
Exon count:
45
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (229763837..229923186, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (230246527..230405874, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (230628553..230787902, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene delta/notch like EGF repeat containing Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC105373923 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230488203-230488702 Neighboring gene RNA, U7 small nuclear 9 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:230579179-230579953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:230579954-230580727 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230591371-230591872 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:230608102-230608922 Neighboring gene MPRA-validated peak4073 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:230715552-230716230 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:230714872-230715551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:230765063-230765564 Neighboring gene MPRA-validated peak4074 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17205 Neighboring gene RNA, U6 small nuclear 613, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230785780-230786280 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230786281-230786781 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17206 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230808542-230809042 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230817679-230818543 Neighboring gene uncharacterized LOC105373924 Neighboring gene RNA, U6 small nuclear 964, pseudogene Neighboring gene F-box protein 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Episignature Mapping of TRIP12 Provides Functional Insight into Clark-Baraitser Syndrome. van der Laan L, et al. Int J Mol Sci, 2022 Nov 8. PMID 36430143, Free PMC Article
  2. The oncogenic E3 ligase TRIP12 suppresses epithelial-mesenchymal transition (EMT) and mesenchymal traits through ZEB1/2. Lee KK, et al. Cell Death Discov, 2021 May 7. PMID 33963176, Free PMC Article
  3. Novel de novo TRIP12 mutation reveals variable phenotypic presentation while emphasizing core features of TRIP12 variations. Donoghue T, et al. Am J Med Genet A, 2020 Jul. PMID 32424948
  4. The E3 ubiquitin ligase TRIP12 participates in cell cycle progression and chromosome stability. Larrieu D, et al. Sci Rep, 2020 Jan 21. PMID 31964993, Free PMC Article
  5. Clark-Baraitser syndrome is associated with a nonsense alteration in the autosomal gene TRIP12. Louie RJ, et al. Am J Med Genet A, 2020 Mar. PMID 31814248

See all (138) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The neurodevelopmental and facial phenotype in individuals with a TRIP12 variant.
    Title: The neurodevelopmental and facial phenotype in individuals with a TRIP12 variant.
  2. Analysis of Ku70 S155 Phospho-Specific BioID2 Interactome Identifies Ku Association with TRIP12 in Response to DNA Damage.
    Title: Analysis of Ku70 S155 Phospho-Specific BioID2 Interactome Identifies Ku Association with TRIP12 in Response to DNA Damage.
  3. Small molecule Z363 co-regulates TAF10 and MYC via the E3 ligase TRIP12 to suppress tumour growth.
    Title: Small molecule Z363 co-regulates TAF10 and MYC via the E3 ligase TRIP12 to suppress tumour growth.
  4. Episignature Mapping of TRIP12 Provides Functional Insight into Clark-Baraitser Syndrome.
    Title: Episignature Mapping of TRIP12 Provides Functional Insight into Clark-Baraitser Syndrome.
  5. TRIP12 ubiquitination of glucocerebrosidase contributes to neurodegeneration in Parkinson's disease.
    Title: TRIP12 ubiquitination of glucocerebrosidase contributes to neurodegeneration in Parkinson's disease.
  6. TRIP12 has an inhibitory role in Epithelial-Mesenchymal Transition (EMT) and possibly, metastasis
    Title: The oncogenic E3 ligase TRIP12 suppresses epithelial-mesenchymal transition (EMT) and mesenchymal traits through ZEB1/2.
  7. The Ubiquitin Ligase TRIP12 Limits PARP1 Trapping and Constrains PARP Inhibitor Efficiency.
    Title: The Ubiquitin Ligase TRIP12 Limits PARP1 Trapping and Constrains PARP Inhibitor Efficiency.
  8. Novel de novo TRIP12 mutation reveals variable phenotypic presentation while emphasizing core features of TRIP12 variations.
    Title: Novel de novo TRIP12 mutation reveals variable phenotypic presentation while emphasizing core features of TRIP12 variations.
  9. Proteasomal degradation of the tumour suppressor FBW7 requires branched ubiquitylation by TRIP12.
    Title: Proteasomal degradation of the tumour suppressor FBW7 requires branched ubiquitylation by TRIP12.
  10. TRIP12 promotes small-molecule-induced degradation through K29/K48-branched ubiquitin chains.
    Title: TRIP12 promotes small-molecule-induced degradation through K29/K48-branched ubiquitin chains.
Submit: New GeneRIF Correction See all GeneRIFs (28)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Clark-Baraitser syndrome
MedGen: C2931130 OMIM: 617752 GeneReviews: Not available
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Copy number response

Description
Copy number response
Triplosensitivity

No evidence available (Last evaluated 2018-04-02)

ClinGen Genome Curation Page
Haploinsufficency

Sufficient evidence for dosage pathogenicity (Last evaluated 2018-04-02)

ClinGen Genome Curation PagePubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ46626, KIAA0045, MGC138849, MGC138850

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables nuclear thyroid hormone receptor binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ubiquitin protein ligase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
  
involved_in DNA repair-dependent chromatin remodeling IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in heterochromatin boundary formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein polyubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein polyubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of embryonic development ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol TAS
Traceable Author Statement
more info
  
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nuclear speck IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIP12
Names
E3 ubiquitin-protein ligase for Arf
HECT-type E3 ubiquitin transferase TRIP12
TR-interacting protein 12
probable E3 ubiquitin-protein ligase TRIP12
thyroid receptor interacting protein 12
NP_001271143.1
NP_001271144.1
NP_001271145.1
NP_001335244.1
NP_001335245.1
NP_001335246.1
NP_001335247.1
NP_001335248.1
NP_001335249.1
NP_001335250.1
NP_001335251.1
NP_001335252.1
NP_001335253.1
NP_001335254.1
NP_001335255.1
NP_001335256.1
NP_001335257.1
NP_001335258.1
NP_001335259.1
NP_001335260.1
NP_001335261.1
NP_001335262.1
NP_001335263.1
NP_001335264.1
NP_001335265.1
NP_004229.1
XP_005247018.1
XP_016860772.1
XP_016860779.1
XP_047302309.1
XP_047302310.1
XP_047302311.1
XP_047302312.1
XP_047302314.1
XP_047302316.1
XP_047302317.1
XP_047302318.1
XP_047302319.1
XP_047302322.1
XP_047302324.1
XP_047302327.1
XP_047302328.1
XP_047302329.1
XP_047302330.1
XP_047302331.1
XP_047302332.1
XP_047302333.1
XP_047302334.1
XP_047302335.1
XP_047302336.1
XP_047302337.1
XP_047302338.1
XP_047302339.1
XP_047302340.1
XP_047302341.1
XP_047302342.1
XP_047302346.1
XP_047302351.1
XP_047302352.1
XP_047302353.1
XP_047302354.1
XP_054200554.1
XP_054200555.1
XP_054200556.1
XP_054200557.1
XP_054200558.1
XP_054200559.1
XP_054200560.1
XP_054200561.1
XP_054200562.1
XP_054200563.1
XP_054200564.1
XP_054200565.1
XP_054200566.1
XP_054200567.1
XP_054200568.1
XP_054200569.1
XP_054200570.1
XP_054200571.1
XP_054200572.1
XP_054200573.1
XP_054200574.1
XP_054200575.1
XP_054200576.1
XP_054200577.1
XP_054200578.1
XP_054200579.1
XP_054200580.1
XP_054200581.1
XP_054200582.1
XP_054200583.1
XP_054200584.1
XP_054200585.1
XP_054200586.1
XP_054200587.1
XP_054200588.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053017.1 RefSeqGene

    Range
    6226..164398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001284214.2 → NP_001271143.1  E3 ubiquitin-protein ligase TRIP12 isoform a

    See identical proteins and their annotated locations for NP_001271143.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1), as well as variant 5, encodes isoform a.
    Source sequence(s)
    AC093384, BC114556, BM677880, D28476, DB240964
    Consensus CDS
    CCDS63146.1
    UniProtKB/TrEMBL
    C9JLD7
    Related
    ENSP00000373696.4, ENST00000389044.8
    Conserved Domains (4) summary
    cd00078
    Location:1638 → 2038
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 846
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  2. NM_001284215.2 → NP_001271144.1  E3 ubiquitin-protein ligase TRIP12 isoform b

    See identical proteins and their annotated locations for NP_001271144.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2), as well as variant 6, encodes isoform b.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92963.1
    UniProtKB/TrEMBL
    C9JLD7
    Related
    ENSP00000515955.1, ENST00000704580.1
    Conserved Domains (4) summary
    cd00078
    Location:1623 → 2023
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:766 → 831
    WWE; WWE domain
    pfam10500
    Location:57 → 191
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:447 → 672
    Arm_3; Atypical Arm repeat

  3. NM_001284216.2 → NP_001271145.1  E3 ubiquitin-protein ligase TRIP12 isoform d

    See identical proteins and their annotated locations for NP_001271145.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) encodes isoform d.
    Source sequence(s)
    AC093384, BC113891, BM677880, D28476, DB240964
    Consensus CDS
    CCDS63145.1
    UniProtKB/TrEMBL
    C9JLD7
    Related
    ENSP00000373697.3, ENST00000389045.7
    Conserved Domains (3) summary
    smart00119
    Location:1338 → 1716
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:1320 → 1720
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:463 → 528
    WWE; WWE domain

  4. NM_001348315.2 → NP_001335244.1  E3 ubiquitin-protein ligase TRIP12 isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5), as well as variant 1, encodes isoform a.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS63146.1
    UniProtKB/TrEMBL
    C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1638 → 2038
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 846
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  5. NM_001348316.2 → NP_001335245.1  E3 ubiquitin-protein ligase TRIP12 isoform b

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6), as well as variant 2, encodes isoform b.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92963.1
    UniProtKB/TrEMBL
    C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1623 → 2023
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:766 → 831
    WWE; WWE domain
    pfam10500
    Location:57 → 191
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:447 → 672
    Arm_3; Atypical Arm repeat

  6. NM_001348317.1 → NP_001335246.1  E3 ubiquitin-protein ligase TRIP12 isoform e

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7), as well as variant 8, encodes isoform e.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92962.1
    UniProtKB/TrEMBL
    A0A994J4J0, C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1618 → 2018
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:766 → 831
    WWE; WWE domain
    pfam10500
    Location:57 → 191
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:447 → 672
    Arm_3; Atypical Arm repeat

  7. NM_001348318.2 → NP_001335247.1  E3 ubiquitin-protein ligase TRIP12 isoform e

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8), as well as variant 7, encodes isoform e.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92962.1
    UniProtKB/TrEMBL
    A0A994J4J0, C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1618 → 2018
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:766 → 831
    WWE; WWE domain
    pfam10500
    Location:57 → 191
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:447 → 672
    Arm_3; Atypical Arm repeat

  8. NM_001348319.1 → NP_001335248.1  E3 ubiquitin-protein ligase TRIP12 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9), as well as variant 10, encodes isoform f.
    Source sequence(s)
    AC009973, AC093384, AC105380
    UniProtKB/TrEMBL
    C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1660 → 2060
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  9. NM_001348320.2 → NP_001335249.1  E3 ubiquitin-protein ligase TRIP12 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10), as well as variant 9, encodes isoform f.
    Source sequence(s)
    AC009973, AC093384, AC105380
    UniProtKB/TrEMBL
    C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1660 → 2060
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  10. NM_001348321.1 → NP_001335250.1  E3 ubiquitin-protein ligase TRIP12 isoform g

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11) encodes isoform g.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92964.1
    UniProtKB/TrEMBL
    A0A994J569, C9JLD7
    Related
    ENSP00000515956.1, ENST00000704581.1
    Conserved Domains (4) summary
    cd00078
    Location:1661 → 2061
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 874
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  11. NM_001348322.1 → NP_001335251.1  E3 ubiquitin-protein ligase TRIP12 isoform h

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12), as well as variants 13-17, encodes isoform h.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92966.1
    UniProtKB/TrEMBL
    A0A6Q8PHK0, C9JLD7
    Related
    ENSP00000515952.1, ENST00000704577.1
    Conserved Domains (4) summary
    cd00078
    Location:1665 → 2065
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  12. NM_001348323.3 → NP_001335252.1  E3 ubiquitin-protein ligase TRIP12 isoform h

    Status: REVIEWED

    Description
    Transcript Variant: This variant (13), as well as variants 12 and 14-17, encodes isoform h.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92966.1
    UniProtKB/TrEMBL
    A0A6Q8PHK0, C9JLD7
    Related
    ENSP00000502713.1, ENST00000675903.1
    Conserved Domains (4) summary
    cd00078
    Location:1665 → 2065
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  13. NM_001348324.2 → NP_001335253.1  E3 ubiquitin-protein ligase TRIP12 isoform h

    Status: REVIEWED

    Description
    Transcript Variant: This variant (14), as well as variants 12-13 and 15-17, encodes isoform h.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92966.1
    UniProtKB/TrEMBL
    A0A6Q8PHK0, C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1665 → 2065
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  14. NM_001348325.2 → NP_001335254.1  E3 ubiquitin-protein ligase TRIP12 isoform h

    Status: REVIEWED

    Description
    Transcript Variant: This variant (15), as well as variants 12-14 and 16-17, encodes isoform h.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92966.1
    UniProtKB/TrEMBL
    A0A6Q8PHK0, C9JLD7
    Related
    ENSP00000502768.1, ENST00000675423.1
    Conserved Domains (4) summary
    cd00078
    Location:1665 → 2065
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  15. NM_001348326.2 → NP_001335255.1  E3 ubiquitin-protein ligase TRIP12 isoform h

    Status: REVIEWED

    Description
    Transcript Variant: This variant (16), as well as variants 12-15 and 17, encodes isoform h.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92966.1
    UniProtKB/TrEMBL
    A0A6Q8PHK0, C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1665 → 2065
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  16. NM_001348327.2 → NP_001335256.1  E3 ubiquitin-protein ligase TRIP12 isoform h

    Status: REVIEWED

    Description
    Transcript Variant: This variant (17), as well as variants 12-16, encodes isoform h.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92966.1
    UniProtKB/TrEMBL
    A0A6Q8PHK0, C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1665 → 2065
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 873
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  17. NM_001348328.1 → NP_001335257.1  E3 ubiquitin-protein ligase TRIP12 isoform i

    Status: REVIEWED

    Description
    Transcript Variant: This variant (18), as well as variants 19 and 20, encodes the longest isoform (i).
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92965.1
    UniProtKB/TrEMBL
    A0A6Q8PGG9, C9JLD7
    Related
    ENSP00000502271.1, ENST00000675453.1
    Conserved Domains (4) summary
    cd00078
    Location:1666 → 2066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 874
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  18. NM_001348329.2 → NP_001335258.1  E3 ubiquitin-protein ligase TRIP12 isoform i

    Status: REVIEWED

    Description
    Transcript Variant: This variant (19), as well as variants 18 and 20, encodes the longest isoform (i).
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92965.1
    UniProtKB/TrEMBL
    A0A6Q8PGG9, C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1666 → 2066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 874
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  19. NM_001348330.2 → NP_001335259.1  E3 ubiquitin-protein ligase TRIP12 isoform i

    Status: REVIEWED

    Description
    Transcript Variant: This variant (20), as well as variants 18 and 19, encodes the longest isoform (i).
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92965.1
    UniProtKB/TrEMBL
    A0A6Q8PGG9, C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1666 → 2066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 874
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  20. NM_001348331.1 → NP_001335260.1  E3 ubiquitin-protein ligase TRIP12 isoform j

    Status: REVIEWED

    Description
    Transcript Variant: This variant (21) encodes isoform j.
    Source sequence(s)
    AC009973, AC093384, AC105380
    Consensus CDS
    CCDS92961.1
    UniProtKB/TrEMBL
    A0A994J755, C9JLD7
    Related
    ENSP00000515960.1, ENST00000704585.1
    Conserved Domains (4) summary
    cd00078
    Location:1591 → 1991
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:766 → 804
    WWE; WWE domain
    pfam10500
    Location:57 → 191
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:447 → 672
    Arm_3; Atypical Arm repeat

  21. NM_001348332.1 → NP_001335261.1  E3 ubiquitin-protein ligase TRIP12 isoform k

    Status: REVIEWED

    Description
    Transcript Variant: This variant (22) encodes isoform k.
    Source sequence(s)
    AC009973, AC093384, AC105380
    UniProtKB/TrEMBL
    C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1631 → 2031
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:779 → 844
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:460 → 685
    Arm_3; Atypical Arm repeat

  22. NM_001348333.1 → NP_001335262.1  E3 ubiquitin-protein ligase TRIP12 isoform l

    Status: REVIEWED

    Description
    Transcript Variant: This variant (23) encodes isoform l.
    Source sequence(s)
    AC009973, AC093384, AC105380
    UniProtKB/TrEMBL
    C9JLD7
    Conserved Domains (4) summary
    cd00078
    Location:1639 → 2039
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:808 → 847
    WWE; WWE domain
    pfam10500
    Location:99 → 233
    SR-25; Nuclear RNA-splicing-associated protein
    cl25709
    Location:489 → 714
    Arm_3; Atypical Arm repeat

  23. NM_001348334.1 → NP_001335263.1  E3 ubiquitin-protein ligase TRIP12 isoform n

    Status: REVIEWED

    Description
    Transcript Variant: This variant (26) encodes isoform n.
    Source sequence(s)
    AC009973
    UniProtKB/TrEMBL
    A0A994J7J0

  24. NM_001348335.2 → NP_001335264.1  E3 ubiquitin-protein ligase TRIP12 isoform m

    Status: REVIEWED

    Description
    Transcript Variant: This variant (24), as well as variant 25, encodes isoform m.
    Source sequence(s)
    AC009973
    UniProtKB/TrEMBL
    A0A994J7J0
    Related
    ENSP00000515958.1, ENST00000704583.1

  25. NM_001348336.1 → NP_001335265.1  E3 ubiquitin-protein ligase TRIP12 isoform m

    Status: REVIEWED

    Description
    Transcript Variant: This variant (25), as well as variant 24, encodes isoform m.
    Source sequence(s)
    AC009973
    UniProtKB/TrEMBL
    A0A994J7J0
    Related
    ENSP00000386388.1, ENST00000409677.5

  26. NM_004238.3 → NP_004229.1  E3 ubiquitin-protein ligase TRIP12 isoform c

    See identical proteins and their annotated locations for NP_004229.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) encodes isoform c.
    Source sequence(s)
    AC093384, BM677880, D28476, DB240964
    Consensus CDS
    CCDS33391.1
    UniProtKB/Swiss-Prot
    D4HL82, Q14669, Q14CA3, Q14CF1, Q15644, Q53R87, Q53TE7
    UniProtKB/TrEMBL
    C9JLD7
    Related
    ENSP00000283943.4, ENST00000283943.9
    Conserved Domains (3) summary
    smart00119
    Location:1608 → 1986
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:1590 → 1990
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:760 → 798
    WWE; WWE domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    229763837..229923186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047446397.1 → XP_047302353.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

  2. XM_047446395.1 → XP_047302351.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

  3. XM_047446390.1 → XP_047302346.1  E3 ubiquitin-protein ligase TRIP12 isoform X17

  4. XM_047446384.1 → XP_047302340.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

  5. XM_047446383.1 → XP_047302339.1  E3 ubiquitin-protein ligase TRIP12 isoform X15

  6. XM_047446381.1 → XP_047302337.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

  7. XM_047446375.1 → XP_047302331.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

  8. XM_005246961.5 → XP_005247018.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

    See identical proteins and their annotated locations for XP_005247018.1

    UniProtKB/TrEMBL
    C9JLD7
    Conserved Domains (3) summary
    smart00119
    Location:1642 → 2020
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:1624 → 2024
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam02825
    Location:766 → 832
    WWE; WWE domain

  9. XM_047446379.1 → XP_047302335.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

  10. XM_017005290.3 → XP_016860779.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

    UniProtKB/TrEMBL
    C9JLD7, H7C1L9
    Related
    ENSP00000400967.2, ENST00000453485.2

  11. XM_047446366.1 → XP_047302322.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

  12. XM_047446373.1 → XP_047302329.1  E3 ubiquitin-protein ligase TRIP12 isoform X8

  13. XM_047446361.1 → XP_047302317.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

  14. XM_017005283.3 → XP_016860772.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

    UniProtKB/TrEMBL
    C9JLD7

  15. XM_047446398.1 → XP_047302354.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

  16. XM_047446396.1 → XP_047302352.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

  17. XM_047446386.1 → XP_047302342.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

  18. XM_047446382.1 → XP_047302338.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

  19. XM_047446377.1 → XP_047302333.1  E3 ubiquitin-protein ligase TRIP12 isoform X11

    UniProtKB/TrEMBL
    A0A994J4J0
    Related
    ENSP00000515953.1, ENST00000704578.1

  20. XM_047446376.1 → XP_047302332.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

  21. XM_047446374.1 → XP_047302330.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

  22. XM_047446363.1 → XP_047302319.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

  23. XM_047446372.1 → XP_047302328.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

  24. XM_047446360.1 → XP_047302316.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

  25. XM_047446353.1 → XP_047302309.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

    UniProtKB/TrEMBL
    A0A6Q8PGG9
    Related
    ENSP00000389827.2, ENST00000430954.6

  26. XM_047446385.1 → XP_047302341.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

  27. XM_047446358.1 → XP_047302314.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

  28. XM_047446356.1 → XP_047302312.1  E3 ubiquitin-protein ligase TRIP12 isoform X3

  29. XM_047446354.1 → XP_047302310.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

    UniProtKB/TrEMBL
    A0A6Q8PGG9

  30. XM_047446380.1 → XP_047302336.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

  31. XM_047446378.1 → XP_047302334.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

    UniProtKB/TrEMBL
    H7C1L9

  32. XM_047446368.1 → XP_047302324.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

  33. XM_047446362.1 → XP_047302318.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

  34. XM_047446371.1 → XP_047302327.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

  35. XM_047446355.1 → XP_047302311.1  E3 ubiquitin-protein ligase TRIP12 isoform X2

    UniProtKB/TrEMBL
    A0A994J569

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    230246527..230405874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054344612.1 → XP_054200587.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

  2. XM_054344610.1 → XP_054200585.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

  3. XM_054344609.1 → XP_054200584.1  E3 ubiquitin-protein ligase TRIP12 isoform X17

  4. XM_054344606.1 → XP_054200581.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

  5. XM_054344605.1 → XP_054200580.1  E3 ubiquitin-protein ligase TRIP12 isoform X15

  6. XM_054344603.1 → XP_054200578.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

  7. XM_054344596.1 → XP_054200571.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

  8. XM_054344594.1 → XP_054200569.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

  9. XM_054344601.1 → XP_054200576.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

  10. XM_054344600.1 → XP_054200575.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

    UniProtKB/TrEMBL
    H7C1L9

  11. XM_054344588.1 → XP_054200563.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

  12. XM_054344593.1 → XP_054200568.1  E3 ubiquitin-protein ligase TRIP12 isoform X8

  13. XM_054344585.1 → XP_054200560.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

  14. XM_054344590.1 → XP_054200565.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

  15. XM_054344613.1 → XP_054200588.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

  16. XM_054344611.1 → XP_054200586.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

  17. XM_054344608.1 → XP_054200583.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

  18. XM_054344604.1 → XP_054200579.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

  19. XM_054344598.1 → XP_054200573.1  E3 ubiquitin-protein ligase TRIP12 isoform X11

    UniProtKB/TrEMBL
    A0A994J4J0

  20. XM_054344597.1 → XP_054200572.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

  21. XM_054344595.1 → XP_054200570.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

  22. XM_054344587.1 → XP_054200562.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

  23. XM_054344592.1 → XP_054200567.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

  24. XM_054344584.1 → XP_054200559.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

  25. XM_054344579.1 → XP_054200554.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

    UniProtKB/TrEMBL
    A0A6Q8PGG9

  26. XM_054344607.1 → XP_054200582.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

  27. XM_054344583.1 → XP_054200558.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

  28. XM_054344582.1 → XP_054200557.1  E3 ubiquitin-protein ligase TRIP12 isoform X3

  29. XM_054344580.1 → XP_054200555.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

    UniProtKB/TrEMBL
    A0A6Q8PGG9

  30. XM_054344602.1 → XP_054200577.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

  31. XM_054344599.1 → XP_054200574.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

    UniProtKB/TrEMBL
    H7C1L9

  32. XM_054344589.1 → XP_054200564.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

  33. XM_054344586.1 → XP_054200561.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

  34. XM_054344591.1 → XP_054200566.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

  35. XM_054344581.1 → XP_054200556.1  E3 ubiquitin-protein ligase TRIP12 isoform X2

    UniProtKB/TrEMBL
    A0A994J569
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q14669.1 GenPept UniProtKB/Swiss-Prot:Q14669

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