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CSPG4P2Y CSPG4 pseudogene 2 Y-linked [ Homo sapiens (human) ]

Gene ID: 84664, updated on 10-Oct-2023

Summary

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Official Symbol
CSPG4P2Yprovided by HGNC
Official Full Name
CSPG4 pseudogene 2 Y-linkedprovided by HGNC
Primary source
HGNC:HGNC:32424
See related
Ensembl:ENSG00000244231 AllianceGenome:HGNC:32424
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSPG4P2; CSPG4PY2; CSPG4LYP2
Summary
There are two copies of this pseudogene within the P1 palindrome on chromosome Y. This record represents the more centromeric copy. This gene is identical to the transcribed locus CSPG4P1Y, GeneID 114758, but is represented as non-transcribed because there is no representative transcript available in a public sequence database. [provided by RefSeq, Feb 2011]
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Genomic context

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Location:
Yq11.23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (24183433..24187230, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (24675342..24679139)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (26329580..26333377, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene golgin A6 family like 11, pseudogene Neighboring gene dynamin 1 pseudogene 24 Neighboring gene CSPG4 pseudogene 3 Y-linked Neighboring gene CHRFAM7A pseudogene 2 Neighboring gene GOLGA2 pseudogene 2 Y-linked Neighboring gene RNA, 7SL, cytoplasmic 818, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • chondroitin sulfate proteoglycan 4 pseudogene 2, Y-linked
  • chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 2
  • chondroitin sulfate proteoglycan 4-like, Y-linked, centromeric

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_087923.1 

    Range
    101..3898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    24183433..24187230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    24675342..24679139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_027933.1: Suppressed sequence

    Description
    NG_027933.1: This RefSeq was permanently suppressed because it is redundant with the annotation of GeneID: 84664 on NG_004755.2.

  2. NM_032577.1: Suppressed sequence

    Description
    NM_032577.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.

  3. NR_002194.1: Suppressed sequence

    Description
    NR_002194.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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