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MFSD14CP major facilitator superfamily domain containing 14C, pseudogene [ Homo sapiens (human) ]

Gene ID: 84278, updated on 5-Mar-2024

Summary

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Official Symbol
MFSD14CPprovided by HGNC
Official Full Name
major facilitator superfamily domain containing 14C, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:23672
See related
Ensembl:ENSG00000290770 AllianceGenome:HGNC:23672
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HIATL2; MFSD14C
Summary
Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in brain (RPKM 4.9), testis (RPKM 4.7) and 25 other tissues See more
Orthologs
all
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Genomic context

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See MFSD14CP in Genome Data Viewer
Location:
9q22.33
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (96942913..97013605, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (109114678..109185385, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (99705195..99775887, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 782 Neighboring gene proline-rich nuclear receptor coactivator 2-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:99680095-99680594 Neighboring gene NANOG hESC enhancer GRCh37_chr9:99680882-99681400 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99686833-99687376 Neighboring gene prothymosin alpha pseudogene 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99693219-99694104 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99694105-99694990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:99697969-99698597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:99698598-99699226 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:99701353-99701853 Neighboring gene NUT family member 2G Neighboring gene yrdC N(6)-threonylcarbamoyltransferase domain containing pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:99739460-99739668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:99750992-99751492 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20097 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:99817940-99818440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:99818441-99818941 Neighboring gene cathepsin V Neighboring gene transcription elongation factor A1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053, Free PMC Article
  2. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • hippocampus abundant gene transcript-like 2
  • hippocampus abundant transcript-like protein 2
  • major facilitator superfamily domain containing 14C

Clone Names

  • FLJ45467, MGC12945

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_172874.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158827, AL445670
    Related
    ENST00000652726.1

  2. NR_172875.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158827, AL445670

  3. NR_172876.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158827, AL445670
    Related
    ENST00000637864.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    96942913..97013605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    109114678..109185385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001355228.2: Suppressed sequence

    Description
    NM_001355228.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  2. NM_001355229.2: Suppressed sequence

    Description
    NM_001355229.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  3. NM_001355230.2: Suppressed sequence

    Description
    NM_001355230.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VZR4.2 GenPept UniProtKB/Swiss-Prot:Q5VZR4

Gene LinkOut

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