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Pramel3a PRAME like 3A [ Mus musculus (house mouse) ]

Gene ID: 83565, updated on 27-Dec-2024

Summary

Official Symbol
Pramel3aprovided by MGI
Official Full Name
PRAME like 3Aprovided by MGI
Primary source
MGI:MGI:1890657
See related
Ensembl:ENSMUSG00000067360 AllianceGenome:MGI:1890657
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pramel3
Summary
Is expressed in germ cell of testis; ovary; primary sex cord; and testis. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward testis adult (RPKM 3.0) See more
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Genomic context

See Pramel3a in Genome Data Viewer
Location:
X F1; X 56.84 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (134203039..134213385)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (135302289..135312636)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene crumbs homolog 1 pseudogene Neighboring gene PRAME like, X-linked 2 Neighboring gene predicted gene, 25936 Neighboring gene predicted pseudogene 6215

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Gene Ontology Provided by MGI

General protein information

Preferred Names
preferentially expressed antigen in melanoma-like 3
Names
PRAME like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031390.2NP_113567.1  preferentially expressed antigen in melanoma-like 3

    See identical proteins and their annotated locations for NP_113567.1

    Status: VALIDATED

    Source sequence(s)
    AL731676
    Consensus CDS
    CCDS30403.1
    UniProtKB/TrEMBL
    A2AHA7, Q8C0W2, Q99M97
    Related
    ENSMUSP00000112761.3, ENSMUST00000118821.8
    Conserved Domains (1) summary
    sd00033
    Location:242272
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    134203039..134213385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528634.3XP_006528697.1  preferentially expressed antigen in melanoma-like 3 isoform X1

    See identical proteins and their annotated locations for XP_006528697.1

    UniProtKB/TrEMBL
    Q8C0W2
    Conserved Domains (1) summary
    sd00033
    Location:243273
    LRR_RI; leucine-rich repeat [structural motif]
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