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Sorcs2 sortilin-related VPS10 domain containing receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 81840, updated on 21-Apr-2024

Summary

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Official Symbol
Sorcs2provided by MGI
Official Full Name
sortilin-related VPS10 domain containing receptor 2provided by MGI
Primary source
MGI:MGI:1932289
See related
Ensembl:ENSMUSG00000029093 AllianceGenome:MGI:1932289
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA1329
Summary
Involved in intracellular protein transport and long-term synaptic depression. Located in early endosome membrane; postsynaptic density; and recycling endosome membrane. Is integral component of plasma membrane. Is expressed in several structures, including brain; future spinal cord; musculature; sensory organ; and spinal cord. Orthologous to human SORCS2 (sortilin related VPS10 domain containing receptor 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in ovary adult (RPKM 13.6), limb E14.5 (RPKM 13.3) and 24 other tissues See more
Orthologs
human all
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Genomic context

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Location:
5 B3; 5 19.14 cM
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (36174524..36555541, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (36017180..36398197, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8820 Neighboring gene actin-binding LIM protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E8050 Neighboring gene H2A histone family, pseudogene 1 Neighboring gene actin filament associated protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:36316611-36316857 Neighboring gene STARR-positive B cell enhancer mm9_chr5:36376513-36376814 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:36431991-36432296 Neighboring gene predicted gene, 52811 Neighboring gene STARR-positive B cell enhancer mm9_chr5:36487276-36487576 Neighboring gene predicted gene, 52810 Neighboring gene STARR-seq mESC enhancer starr_12872 Neighboring gene predicted gene, 32183 Neighboring gene predicted gene, 31945 Neighboring gene predicted gene, 32119 Neighboring gene prosaposin-like 1 Neighboring gene microRNA 7689 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:36701008-36701161 Neighboring gene STARR-positive B cell enhancer mm9_chr5:36715900-36716201 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:36720744-36720945 Neighboring gene RIKEN cDNA 2210406O10 gene Neighboring gene STARR-positive B cell enhancer ABC_E65 Neighboring gene GrpE-like 1, mitochondrial Neighboring gene transcriptional adaptor 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. SorCS2 is required for social memory and trafficking of the NMDA receptor. Yang J, et al. Mol Psychiatry, 2021 Mar. PMID 31988435
  2. SorCS2 facilitates release of endostatin from astrocytes and controls post-stroke angiogenesis. Malik AR, et al. Glia, 2020 Jun. PMID 31898841
  3. Reduced Alcohol Seeking and Withdrawal Symptoms in Mice Lacking the BDNF Receptor SorCS2. Olsen D, et al. Front Pharmacol, 2019. PMID 31156431, Free PMC Article
  4. Identification of SorCS2, a novel member of the VPS10 domain containing receptor family, prominently expressed in the developing mouse brain. Rezgaoui M, et al. Mech Dev, 2001 Feb. PMID 11165493
  5. SorCS2-mediated NR2A trafficking regulates motor deficits in Huntington's disease. Ma Q, et al. JCI Insight, 2017 May 4. PMID 28469074, Free PMC Article

See all (36) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SorCS2 binds progranulin to regulate motor neuron development.
    Title: SorCS2 binds progranulin to regulate motor neuron development.
  2. Astrocytic microdomains from mouse cortex gain molecular control over long-term information storage and memory retention.
    Title: Astrocytic microdomains from mouse cortex gain molecular control over long-term information storage and memory retention.
  3. SorCS2 is required for social memory and trafficking of the NMDA receptor.
    Title: SorCS2 is required for social memory and trafficking of the NMDA receptor.
  4. THe sortilin and SorCS2 are extensively present in several distinct anatomical areas in the developing nervous system and are rarely co-expressed.
    Title: Highly segregated localization of the functionally related vps10p receptors sortilin and SorCS2 during neurodevelopment.
  5. structural analysis of binding of NGF, proNGF, and proBDNF to SorCS2
    Title: Structural insights into SorCS2-Nerve Growth Factor complex formation.
  6. Results indicate that hearing loss and hair bundle defects are associated with SorCS2 (Sortilin-related VPS-10 domain containing protein) disruption.
    Title: Disruption of SorCS2 reveals differences in the regulation of stereociliary bundle formation between hair cell types in the inner ear.
  7. SorCS2 is expressed in mesodermally derived tissues such as striated muscle, adipose tissue, ossifying bone and connective tissue.
    Title: Spatiotemporal patterns of sortilin and SorCS2 localization during organ development.
  8. SorCS3 and the homologous sorCS1 and sorCS2 genes were expressed in a combinatorial mostly non-overlapping pattern in the developing and mature central nervous system; activity-dependent induction of sorCS3 did not require protein synthesis
    Title: The three sorCS genes are differentially expressed and regulated by synaptic activity.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in long-term synaptic depression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in early endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in postsynaptic density IDA
Inferred from Direct Assay
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
  
located_in recycling endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
VPS10 domain-containing receptor SorCS2
Names
VPS10 domain receptor protein SORCS 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030889.2 → NP_112151.2  VPS10 domain-containing receptor SorCS2 precursor

    See identical proteins and their annotated locations for NP_112151.2

    Status: VALIDATED

    Source sequence(s)
    AC127275, AK047881, AK053853, AY004316, CO428928, CV784176
    Consensus CDS
    CCDS19237.1
    UniProtKB/Swiss-Prot
    B2RSI2, B2RSI4, Q9EPR5
    UniProtKB/TrEMBL
    Q8CHA4
    Related
    ENSMUSP00000041828.8, ENSMUST00000037370.14
    Conserved Domains (3) summary
    smart00602
    Location:170 → 776
    VPS10; VPS10 domain
    PHA03307
    Location:1 → 130
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam00801
    Location:798 → 860
    PKD; PKD domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    36174524..36555541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504202.4 → XP_006504265.1  VPS10 domain-containing receptor SorCS2 isoform X1

    UniProtKB/TrEMBL
    Q8CHA4
    Conserved Domains (3) summary
    smart00602
    Location:170 → 776
    VPS10; VPS10 domain
    PHA03307
    Location:1 → 130
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam00801
    Location:798 → 860
    PKD; PKD domain

  2. XM_036165631.1 → XP_036021524.1  VPS10 domain-containing receptor SorCS2 isoform X3

    UniProtKB/TrEMBL
    Q8CHA4
    Conserved Domains (2) summary
    smart00602
    Location:30 → 636
    VPS10; VPS10 domain
    pfam00801
    Location:658 → 723
    PKD; PKD domain

  3. XM_036165630.1 → XP_036021523.1  VPS10 domain-containing receptor SorCS2 isoform X2

    UniProtKB/TrEMBL
    Q8CHA4
    Conserved Domains (2) summary
    smart00602
    Location:30 → 636
    VPS10; VPS10 domain
    pfam00801
    Location:658 → 723
    PKD; PKD domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9EPR5.2 GenPept UniProtKB/Swiss-Prot:Q9EPR5

Gene LinkOut

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