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Smim12 small integral membrane protein 12 [ Mus musculus (house mouse) ]

Gene ID: 80284, updated on 5-Mar-2024

Summary

Official Symbol
Smim12provided by MGI
Official Full Name
small integral membrane protein 12provided by MGI
Primary source
MGI:MGI:1933141
See related
Ensembl:ENSMUSG00000042380 AllianceGenome:MGI:1933141
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM12 (small integral membrane protein 12). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in cerebellum adult (RPKM 22.6), adrenal adult (RPKM 20.2) and 28 other tissues See more
Orthologs
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Genomic context

Location:
4 D2.2; 4 61.41 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (127137577..127141602)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (127243784..127247809)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene STARR-seq mESC enhancer starr_11423 Neighboring gene DLG associated protein 3 Neighboring gene STARR-seq mESC enhancer starr_11425 Neighboring gene STARR-seq mESC enhancer starr_11428 Neighboring gene predicted gene, 52707 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:126920065-126920248 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:126920954-126921137 Neighboring gene predicted gene, 22221 Neighboring gene crumbs homolog 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Clone Names

  • MGC7764

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 12
Names
UPF0767 protein C1orf212 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030252.2NP_084528.1  small integral membrane protein 12

    See identical proteins and their annotated locations for NP_084528.1

    Status: VALIDATED

    Source sequence(s)
    AK141221, BQ173894, BY237825
    Consensus CDS
    CCDS38883.1
    UniProtKB/Swiss-Prot
    Q78RX3
    Related
    ENSMUSP00000131941.2, ENSMUST00000142029.2
    Conserved Domains (1) summary
    pfam15990
    Location:187
    UPF0767; UPF0767 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    127137577..127141602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)