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4930562C15Rik RIKEN cDNA 4930562C15 gene [ Mus musculus (house mouse) ]

Gene ID: 78809, updated on 5-Mar-2024

Summary

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Official Symbol
4930562C15Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930562C15 geneprovided by MGI
Primary source
MGI:MGI:1926059
See related
Ensembl:ENSMUSG00000022518 AllianceGenome:MGI:1926059
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C16orf96 (chromosome 16 open reading frame 96). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 13.3) and lung adult (RPKM 1.2) See more
Orthologs
human all
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Genomic context

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Location:
16 A1; 16 2.47 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (4653280..4685555)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (4835416..4867691)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4726231-4726340 Neighboring gene NmrA-like family domain containing 1 Neighboring gene heme oxygenase 2 Neighboring gene STARR-seq mESC enhancer starr_39943 Neighboring gene cell death inducing Trp53 target 1 Neighboring gene STARR-positive B cell enhancer ABC_E7425 Neighboring gene STARR-seq mESC enhancer starr_39945 Neighboring gene predicted gene, 36513 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4878205-4878392 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4879753-4879936 Neighboring gene STARR-positive B cell enhancer ABC_E1919 Neighboring gene UBA-like domain containing 1 Neighboring gene mahogunin, ring finger 1 Neighboring gene predicted gene, 16861

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The mouse mahoganoid coat color mutation disrupts a novel C3HC4 RING domain protein. Phan LK, et al. J Clin Invest, 2002 Nov. PMID 12438443, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C16orf96 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030192.1 → NP_084468.1  uncharacterized protein C16orf96 homolog

    See identical proteins and their annotated locations for NP_084468.1

    Status: PROVISIONAL

    Source sequence(s)
    AC167018
    UniProtKB/Swiss-Prot
    E9QMW4, Q3V087
    Related
    ENSMUSP00000097784.4, ENSMUST00000100211.11
    Conserved Domains (3) summary
    cl14654
    Location:68 → 195
    V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
    pfam07271
    Location:314 → 472
    Cytadhesin_P30; Cytadhesin P30/P32
    pfam16043
    Location:760 → 934
    DUF4795; Domain of unknown function (DUF4795)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    4653280..4685555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246045.2 → XP_011244347.1  uncharacterized protein C16orf96 homolog isoform X1

    Conserved Domains (2) summary
    pfam07271
    Location:97 → 255
    Cytadhesin_P30; Cytadhesin P30/P32
    pfam16043
    Location:543 → 717
    DUF4795; Domain of unknown function (DUF4795)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001252142.1: Suppressed sequence

    Description
    NM_001252142.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E9QMW4.1 GenPept UniProtKB/Swiss-Prot:E9QMW4

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