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4930414F18Rik RIKEN cDNA 4930414F18 gene [ Mus musculus (house mouse) ]

Gene ID: 78790, updated on 8-Feb-2024

Summary

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Official Symbol
4930414F18Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930414F18 geneprovided by MGI
Primary source
MGI:MGI:1926040
See related
AllianceGenome:MGI:1926040
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 1.4) See more
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Genomic context

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Location:
16; 16 A1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (12583567..12763796, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (12765794..12834942, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40118 Neighboring gene predicted gene, 38619 Neighboring gene STARR-seq mESC enhancer starr_40119 Neighboring gene predicted gene, 57486 Neighboring gene STARR-seq mESC enhancer starr_40120 Neighboring gene STARR-seq mESC enhancer starr_40121 Neighboring gene STARR-seq mESC enhancer starr_40122 Neighboring gene RIKEN cDNA 1700003L19 gene Neighboring gene STARR-seq mESC enhancer starr_40123 Neighboring gene STARR-seq mESC enhancer starr_40124 Neighboring gene STARR-seq mESC enhancer starr_40126 Neighboring gene STARR-seq mESC enhancer starr_40128 Neighboring gene ZW10 interactor pseudogene Neighboring gene STARR-seq mESC enhancer starr_40129 Neighboring gene STARR-seq mESC enhancer starr_40130 Neighboring gene STARR-seq mESC enhancer starr_40131 Neighboring gene STARR-seq mESC enhancer starr_40134 Neighboring gene STARR-positive B cell enhancer mm9_chr16:13109553-13109853 Neighboring gene STARR-seq mESC enhancer starr_40135 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171006.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117197, AC140465

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    12583567..12763796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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