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Celf3 CUGBP, Elav-like family member 3 [ Mus musculus (house mouse) ]

Gene ID: 78784, updated on 5-Mar-2024

Summary

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Official Symbol
Celf3provided by MGI
Official Full Name
CUGBP, Elav-like family member 3provided by MGI
Primary source
MGI:MGI:1926034
See related
Ensembl:ENSMUSG00000028137 AllianceGenome:MGI:1926034
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CAGH4; ERDA4; ETR-1; Tnrc4; BRUNOL1; 4930415M08Rik
Summary
Enables 7SK snRNA binding activity. Acts upstream of or within several processes, including flagellated sperm motility; ncRNA transcription; and nuclear body organization. Located in cytoplasm and nuclear body. Is expressed in several structures, including adrenal medulla; gut; nervous system; neural retina; and nose. Orthologous to human CELF3 (CUGBP Elav-like family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in whole brain E14.5 (RPKM 85.2), CNS E14 (RPKM 68.5) and 8 other tissues See more
Orthologs
human all
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Genomic context

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Location:
3 F2.1; 3 40.73 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (94385581..94405822)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (94478285..94496786)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S2-like Neighboring gene STARR-positive B cell enhancer mm9_chr3:94260392-94260693 Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 Neighboring gene sorting nexin family member 27 Neighboring gene STARR-seq mESC enhancer starr_08351 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94386567-94386676 Neighboring gene translation machinery-associated protein 7 pseudogene Neighboring gene ribosomal protein L31, pseudogene 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mice deficient for RNA-binding protein brunol1 show reduction of spermatogenesis but are fertile. Dev A, et al. Mol Reprod Dev, 2007 Nov. PMID 17393433
  2. Formation of nuclear bodies by the lncRNA Gomafu-associating proteins Celf3 and SF1. Ishizuka A, et al. Genes Cells, 2014 Sep. PMID 25145264, Free PMC Article
  3. Potential target genes of EMX2 include Odz/Ten-M and other gene families with implications for cortical patterning. Li H, et al. Mol Cell Neurosci, 2006 Oct. PMID 16919471
  4. Regulation of otocyst patterning by Tbx2 and Tbx3 is required for inner ear morphogenesis in the mouse. Kaiser M, et al. Development, 2021 Apr 15. PMID 33795231
  5. Insm1 promotes endocrine cell differentiation by modulating the expression of a network of genes that includes Neurog3 and Ripply3. Osipovich AB, et al. Development, 2014 Aug. PMID 25053427, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Brunol1 might be nonessential protein for mouse embryonic development and spermatogenesis.
    Title: Mice deficient for RNA-binding protein brunol1 show reduction of spermatogenesis but are fertile.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 7SK snRNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables RNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables RNA binding ISO
Inferred from Sequence Orthology
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA splicing ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within flagellated sperm motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA splice site recognition IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within ncRNA transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nuclear body organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of alternative mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within spermatogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nuclear body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  
part_of ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CUGBP Elav-like family member 3
Names
CUG-BP- and ETR-3-like factor 3
ELAV-type RNA-binding protein 1
RNA-binding protein BRUNOL-1
VCUGBP, Elav-like family member 3
bruno-like protein 1
trinucleotide repeat containing 4
trinucleotide repeat-containing gene 4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289613.2 → NP_001276542.1  CUGBP Elav-like family member 3 isoform 1

    See identical proteins and their annotated locations for NP_001276542.1

    Status: VALIDATED

    Source sequence(s)
    BC057553, BY124225
    Consensus CDS
    CCDS79972.1
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Related
    ENSMUSP00000143344.2, ENSMUST00000200342.5
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 379
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:405 → 483
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  2. NM_001289616.1 → NP_001276545.1  CUGBP Elav-like family member 3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK044506, BC057553, BY089288
    Consensus CDS
    CCDS79974.1
    UniProtKB/TrEMBL
    A0A0G2JDL2, A0A0G2JGE2
    Related
    ENSMUSP00000142412.2, ENSMUST00000198316.5
    Conserved Domains (3) summary
    cd12639
    Location:300 → 378
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:20 → 385
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  3. NM_001289620.1 → NP_001276549.1  CUGBP Elav-like family member 3 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC122808, AK087536, BC057553, BY089288
    Consensus CDS
    CCDS79973.1
    UniProtKB/TrEMBL
    A0A0G2JGX2
    Related
    ENSMUSP00000143733.2, ENSMUST00000197558.5
    Conserved Domains (3) summary
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:281 → 359
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:1 → 12
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. NM_001357784.1 → NP_001344713.1  CUGBP Elav-like family member 3 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC122808, BC057553
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Related
    ENSMUSP00000143532.2, ENSMUST00000199775.5
    Conserved Domains (4) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:377 → 455
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl26386
    Location:214 → 351
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  5. NM_001357785.1 → NP_001344714.1  CUGBP Elav-like family member 3 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC122808, BC057553
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    TIGR01628
    Location:21 → 225
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:329 → 407
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  6. NM_001357786.1 → NP_001344715.1  CUGBP Elav-like family member 3 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC122808, BC057553
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    cd12639
    Location:301 → 379
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 386
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  7. NM_001357787.1 → NP_001344716.1  CUGBP Elav-like family member 3 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC122808, AK019578, BC057553
    Related
    ENSMUST00000199148.5
    Conserved Domains (2) summary
    cd12639
    Location:198 → 276
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl25887
    Location:109 → 283
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  8. NM_001379249.1 → NP_001366178.1  CUGBP Elav-like family member 3 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC122808
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 379
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:405 → 483
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  9. NM_001379250.1 → NP_001366179.1  CUGBP Elav-like family member 3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122808
    UniProtKB/Swiss-Prot
    Q6PFH2, Q8CIN6
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (4) summary
    PRK12323
    Location:213 → 350
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:376 → 454
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  10. NM_001379251.1 → NP_001366180.1  CUGBP Elav-like family member 3 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC122808
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    TIGR01628
    Location:20 → 224
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:328 → 406
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  11. NM_001379252.1 → NP_001366181.1  CUGBP Elav-like family member 3 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC122808
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    TIGR01628
    Location:21 → 225
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:329 → 407
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  12. NM_001379253.1 → NP_001366182.1  CUGBP Elav-like family member 3 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC122808
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    cd12639
    Location:301 → 379
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 386
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  13. NM_001379254.1 → NP_001366183.1  CUGBP Elav-like family member 3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC122808
    UniProtKB/TrEMBL
    A0A0G2JDL2, A0A0G2JGE2
    Conserved Domains (3) summary
    cd12639
    Location:300 → 378
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:20 → 385
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  14. NM_001379255.1 → NP_001366184.1  CUGBP Elav-like family member 3 isoform 13

    Status: VALIDATED

    Source sequence(s)
    AC122808
    Conserved Domains (3) summary
    TIGR01628
    Location:21 → 369
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:282 → 360
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  15. NM_001379256.1 → NP_001366185.1  CUGBP Elav-like family member 3 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC122808
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    TIGR01628
    Location:21 → 225
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:329 → 407
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  16. NM_172434.4 → NP_766022.1  CUGBP Elav-like family member 3 isoform 2

    See identical proteins and their annotated locations for NP_766022.1

    Status: VALIDATED

    Source sequence(s)
    BC057553, BY124225
    Consensus CDS
    CCDS38536.1
    UniProtKB/Swiss-Prot
    Q6PFH2, Q8CIN6
    UniProtKB/TrEMBL
    A0A0G2JGE2
    Related
    ENSMUSP00000029784.6, ENSMUST00000029784.10
    Conserved Domains (4) summary
    PRK12323
    Location:213 → 350
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:376 → 454
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

RNA

  1. NR_110353.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122808, AK030259, BC057553
    Related
    ENSMUST00000197699.5

  2. NR_151857.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122808, BC057553

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    94385581..94405822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252906.2 → XP_030108766.1  CUGBP Elav-like family member 3 isoform X8

    Conserved Domains (3) summary
    TIGR01628
    Location:7 → 201
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:305 → 383
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  2. XM_030252914.2 → XP_030108774.1  CUGBP Elav-like family member 3 isoform X10

    Conserved Domains (3) summary
    TIGR01628
    Location:21 → 341
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:254 → 332
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  3. XM_006502335.4 → XP_006502398.1  CUGBP Elav-like family member 3 isoform X8

    See identical proteins and their annotated locations for XP_006502398.1

    Conserved Domains (3) summary
    TIGR01628
    Location:7 → 201
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:305 → 383
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  4. XM_036163413.1 → XP_036019306.1  CUGBP Elav-like family member 3 isoform X5

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    TIGR01628
    Location:21 → 225
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:329 → 407
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  5. XM_030252913.2 → XP_030108773.1  CUGBP Elav-like family member 3 isoform X9

    Conserved Domains (3) summary
    cd12639
    Location:277 → 355
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:2 → 362
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  6. XM_030252907.2 → XP_030108767.1  CUGBP Elav-like family member 3 isoform X8

    Conserved Domains (3) summary
    TIGR01628
    Location:7 → 201
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:305 → 383
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  7. XM_030252912.2 → XP_030108772.1  CUGBP Elav-like family member 3 isoform X9

    Conserved Domains (3) summary
    cd12639
    Location:277 → 355
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:2 → 362
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  8. XM_006502324.4 → XP_006502387.1  CUGBP Elav-like family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (5) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:404 → 482
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    pfam08549
    Location:245 → 378
    SWI-SNF_Ssr4; Fungal domain of unknown function (DUF1750)
    pfam11593
    Location:147 → 307
    Med3; Mediator complex subunit 3 fungal

  9. XM_006502328.4 → XP_006502391.1  CUGBP Elav-like family member 3 isoform X4

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (4) summary
    PRK14951
    Location:194 → 326
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:330 → 408
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  10. XM_030252905.2 → XP_030108765.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    TIGR01628
    Location:20 → 224
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:328 → 406
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  11. XM_036163415.1 → XP_036019308.1  CUGBP Elav-like family member 3 isoform X8

    Conserved Domains (3) summary
    TIGR01628
    Location:7 → 201
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:305 → 383
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  12. XM_036163416.1 → XP_036019309.1  CUGBP Elav-like family member 3 isoform X9

    Conserved Domains (3) summary
    cd12639
    Location:277 → 355
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:2 → 362
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  13. XM_006502327.4 → XP_006502390.1  CUGBP Elav-like family member 3 isoform X2

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (5) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:358 → 436
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01659
    Location:272 → 444
    sex-lethal; sex-lethal family splicing factor
    pfam11593
    Location:148 → 308
    Med3; Mediator complex subunit 3 fungal

  14. XM_011240284.3 → XP_011238586.1  CUGBP Elav-like family member 3 isoform X3

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (5) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:357 → 435
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01659
    Location:271 → 443
    sex-lethal; sex-lethal family splicing factor
    pfam11593
    Location:147 → 307
    Med3; Mediator complex subunit 3 fungal

  15. XM_030252904.2 → XP_030108764.1  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (4) summary
    PRK14951
    Location:193 → 325
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:329 → 407
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  16. XM_030252911.2 → XP_030108771.1  CUGBP Elav-like family member 3 isoform X9

    Conserved Domains (3) summary
    cd12639
    Location:277 → 355
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:2 → 362
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:1 → 74
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  17. XM_006502334.4 → XP_006502397.1  CUGBP Elav-like family member 3 isoform X7

    See identical proteins and their annotated locations for XP_006502397.1

    UniProtKB/TrEMBL
    A0A0G2JGE2
    Conserved Domains (3) summary
    TIGR01628
    Location:20 → 224
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12639
    Location:328 → 406
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

RNA

  1. XR_004941415.1 RNA Sequence

  2. XR_003954425.2 RNA Sequence

    Related
    ENSMUST00000198796.5

  3. XR_003954426.2 RNA Sequence

  4. XR_003954424.2 RNA Sequence

  5. XR_004941414.1 RNA Sequence

  6. XR_001783779.3 RNA Sequence

  7. XR_375601.5 RNA Sequence

  8. XR_003954427.2 RNA Sequence

  9. XR_004941416.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CIN6.1 GenPept UniProtKB/Swiss-Prot:Q8CIN6

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