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Acsbg3 acyl-CoA synthetase bubblegum family member 3 [ Mus musculus (house mouse) ]

Gene ID: 78625, updated on 8-Feb-2024

Summary

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Official Symbol
Acsbg3provided by MGI
Official Full Name
acyl-CoA synthetase bubblegum family member 3provided by MGI
Primary source
MGI:MGI:1925875
See related
Ensembl:ENSMUSG00000024209 AllianceGenome:MGI:1925875
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700026H02; 1700061G19Rik
Summary
Predicted to enable long-chain fatty acid-CoA ligase activity. Predicted to be involved in long-chain fatty acid biosynthetic process. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 46.4) and bladder adult (RPKM 1.5) See more
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Genomic context

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See Acsbg3 in Genome Data Viewer
Location:
17 D; 17 29.55 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (57182453..57195907)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (56875452..56889855)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene regulatory factor X, 2 (influences HLA class II expression) Neighboring gene predicted gene, 41604 Neighboring gene STARR-positive B cell enhancer ABC_E5625 Neighboring gene STARR-seq mESC enhancer starr_42905 Neighboring gene acyl-CoA synthetase bubblegum family member 2 Neighboring gene STARR-seq mESC enhancer starr_42911 Neighboring gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1 Neighboring gene STARR-positive B cell enhancer ABC_E1946 Neighboring gene alkaline ceramidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables long-chain fatty acid-CoA ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in long-chain fatty acid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC78625

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030141.2 → NP_084417.1  uncharacterized protein LOC78625

    See identical proteins and their annotated locations for NP_084417.1

    Status: VALIDATED

    Source sequence(s)
    AC073683, BC116283
    Consensus CDS
    CCDS37666.1
    UniProtKB/TrEMBL
    Q08EE8
    Related
    ENSMUSP00000025048.7, ENSMUST00000025048.7
    Conserved Domains (2) summary
    cd05933
    Location:95 → 700
    ACSBG_like; Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)
    COG1022
    Location:74 → 701
    FAA1; Long-chain acyl-CoA synthetase (AMP-forming) [Lipid transport and metabolism]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    57182453..57195907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525141.3 → XP_006525204.1  uncharacterized protein LOC78625 isoform X1

    Conserved Domains (1) summary
    cl17068
    Location:95 → 334
    AFD_class_I; Adenylate forming domain, Class I superfamily

RNA

  1. XR_385395.4 RNA Sequence

  2. XR_385396.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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