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Btbd19 BTB domain containing 19 [ Mus musculus (house mouse) ]

Gene ID: 78611, updated on 5-Mar-2024

Summary

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Official Symbol
Btbd19provided by MGI
Official Full Name
BTB domain containing 19provided by MGI
Primary source
MGI:MGI:1925861
See related
Ensembl:ENSMUSG00000073771 AllianceGenome:MGI:1925861
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9530048O09Rik
Summary
Orthologous to human BTBD19 (BTB domain containing 19). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in subcutaneous fat pad adult (RPKM 3.0), spleen adult (RPKM 2.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
4 D1; 4 53.41 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (116976409..116983531, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (117119219..117125658, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2B, subunit 3 Neighboring gene predicted gene, 22335 Neighboring gene STARR-seq mESC enhancer starr_11152 Neighboring gene Ptch2 Hedgehog-responsive enhancers Neighboring gene patched 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:116793139-116793326 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:116797070-116797223 Neighboring gene STARR-positive B cell enhancer ABC_E2707 Neighboring gene dynein light chain Tctex-type 4 Neighboring gene STARR-positive B cell enhancer ABC_E7981 Neighboring gene polo like kinase 3 Neighboring gene bestrophin 4, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein 19
Names
BTB (POZ) domain containing 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001384196.1 → NP_001371125.1  BTB/POZ domain-containing protein 19

    Status: VALIDATED

    Source sequence(s)
    AL671866
    UniProtKB/TrEMBL
    S4R1I0
    Related
    ENSMUSP00000138230.2, ENSMUST00000183310.2
    Conserved Domains (2) summary
    cd18294
    Location:15 → 108
    BTB_POZ_BTBD19; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 19 (BTBD19)
    cd18494
    Location:125 → 197
    BACK_BTBD19; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 19 (BTBD19)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    116976409..116983531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036164557.1 → XP_036020450.1  BTB/POZ domain-containing protein 19 isoform X6

    Conserved Domains (1) summary
    cd18294
    Location:15 → 108
    BTB_POZ_BTBD19; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 19 (BTBD19)

  2. XM_036164556.1 → XP_036020449.1  BTB/POZ domain-containing protein 19 isoform X5

    Conserved Domains (2) summary
    cd18294
    Location:15 → 108
    BTB_POZ_BTBD19; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 19 (BTBD19)
    cl28903
    Location:125 → 157
    BACK; BACK (BTB and C-terminal Kelch) domain

  3. XM_036164552.1 → XP_036020445.1  BTB/POZ domain-containing protein 19 isoform X1

    Conserved Domains (2) summary
    cd18294
    Location:15 → 108
    BTB_POZ_BTBD19; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 19 (BTBD19)
    cd18494
    Location:125 → 197
    BACK_BTBD19; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 19 (BTBD19)

  4. XM_036164553.1 → XP_036020446.1  BTB/POZ domain-containing protein 19 isoform X2

    Conserved Domains (1) summary
    cd18494
    Location:82 → 154
    BACK_BTBD19; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 19 (BTBD19)

  5. XM_036164554.1 → XP_036020447.1  BTB/POZ domain-containing protein 19 isoform X3

    Conserved Domains (1) summary
    cd18494
    Location:61 → 133
    BACK_BTBD19; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 19 (BTBD19)

  6. XM_036164558.1 → XP_036020451.1  BTB/POZ domain-containing protein 19 isoform X7

    Conserved Domains (1) summary
    cl28903
    Location:82 → 114
    BACK; BACK (BTB and C-terminal Kelch) domain

  7. XM_036164555.1 → XP_036020448.1  BTB/POZ domain-containing protein 19 isoform X4

    Conserved Domains (1) summary
    cd18494
    Location:82 → 154
    BACK_BTBD19; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 19 (BTBD19)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033187.1: Suppressed sequence

    Description
    NM_001033187.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

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