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Ccdc190 coiled-coil domain containing 190 [ Mus musculus (house mouse) ]

Gene ID: 78465, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc190provided by MGI
Official Full Name
coiled-coil domain containing 190provided by MGI
Primary source
MGI:MGI:1925715
See related
Ensembl:ENSMUSG00000070532 AllianceGenome:MGI:1925715
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700084C01Rik
Summary
Orthologous to human CCDC190 (coiled-coil domain containing 190). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 5.5), cortex adult (RPKM 4.1) and 8 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 H3; 1 76.84 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (169756172..169764816)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (169928599..169935318)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02979 Neighboring gene regulator of G-protein signaling 4 Neighboring gene predicted gene, 22114 Neighboring gene RIKEN cDNA 3110045C21 gene Neighboring gene STARR-positive B cell enhancer ABC_E501 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 7 Neighboring gene discoidin domain receptor family, member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Brn3a and Nurr1 mediate a gene regulatory pathway for habenula development. Quina LA, et al. J Neurosci, 2009 Nov 11. PMID 19906978, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 190

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033185.2 → NP_001028357.1  coiled-coil domain-containing protein 190 isoform 1

    See identical proteins and their annotated locations for NP_001028357.1

    Status: VALIDATED

    Source sequence(s)
    AK141447
    Consensus CDS
    CCDS15466.1
    UniProtKB/Swiss-Prot
    Q3URK1
    UniProtKB/TrEMBL
    B9EKE1
    Related
    ENSMUSP00000091908.4, ENSMUST00000094348.4
    Conserved Domains (1) summary
    pfam15768
    Location:9 → 274
    CC190; Coiled-coil domain-containing protein 190

  2. NM_001347138.1 → NP_001334067.1  coiled-coil domain-containing protein 190 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC139673
    Consensus CDS
    CCDS83630.1
    UniProtKB/TrEMBL
    B7ZWE2, B9EKE1, H3BLK0
    Related
    ENSMUSP00000135819.2, ENSMUST00000175731.3
    Conserved Domains (1) summary
    pfam15768
    Location:9 → 275
    CC190; Coiled-coil domain-containing protein 190

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    169756172..169764816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243683.2 → XP_030099543.1  coiled-coil domain-containing protein 190 isoform X1

    UniProtKB/TrEMBL
    B7ZWE2, B9EKE1, H3BLK0
    Conserved Domains (1) summary
    pfam15768
    Location:9 → 275
    CC190; Coiled-coil domain-containing protein 190

  2. XM_030243685.2 → XP_030099545.1  coiled-coil domain-containing protein 190 isoform X2

    UniProtKB/Swiss-Prot
    Q3URK1
    UniProtKB/TrEMBL
    B9EKE1
    Conserved Domains (1) summary
    pfam15768
    Location:9 → 274
    CC190; Coiled-coil domain-containing protein 190

  3. XM_006497036.4 → XP_006497099.1  coiled-coil domain-containing protein 190 isoform X1

    See identical proteins and their annotated locations for XP_006497099.1

    UniProtKB/TrEMBL
    B7ZWE2, B9EKE1, H3BLK0
    Conserved Domains (1) summary
    pfam15768
    Location:9 → 275
    CC190; Coiled-coil domain-containing protein 190

  4. XM_006497037.5 → XP_006497100.1  coiled-coil domain-containing protein 190 isoform X1

    See identical proteins and their annotated locations for XP_006497100.1

    UniProtKB/TrEMBL
    B7ZWE2, B9EKE1, H3BLK0
    Conserved Domains (1) summary
    pfam15768
    Location:9 → 275
    CC190; Coiled-coil domain-containing protein 190
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3URK1.1 GenPept UniProtKB/Swiss-Prot:Q3URK1

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