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Plscr1l1 phospholipid scramblase 1 like 1 [ Mus musculus (house mouse) ]

Gene ID: 78459, updated on 8-Feb-2024

Summary

Official Symbol
Plscr1l1provided by MGI
Official Full Name
phospholipid scramblase 1 like 1provided by MGI
Primary source
MGI:MGI:1925709
See related
Ensembl:ENSMUSG00000074139 AllianceGenome:MGI:1925709
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700057G04Rik
Summary
Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; metal ion binding activity; and signaling receptor binding activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be located in several cellular components, including membrane raft; nuclear lumen; and perinuclear region of cytoplasm. Predicted to be integral component of plasma membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including PLSCR1 (phospholipid scramblase 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 18.6) See more
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Genomic context

See Plscr1l1 in Genome Data Viewer
Location:
9 E3.3; 9 48.36 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (92191379..92239929)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (92309326..92357876)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene phospholipid scramblase 1 Neighboring gene microRNA 6386 Neighboring gene phospholipid scramblase 2 Neighboring gene STARR-seq mESC enhancer starr_24898 Neighboring gene predicted gene 15493 Neighboring gene phospholipid scramblase 4 Neighboring gene STARR-seq mESC enhancer starr_24899 Neighboring gene predicted gene, 25417

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables phospholipid scramblase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in plasma membrane phospholipid scrambling IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC78459
Names
novel Plsrc protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033184.3NP_001028356.1  uncharacterized protein LOC78459

    See identical proteins and their annotated locations for NP_001028356.1

    Status: PREDICTED

    Source sequence(s)
    AC111125, CT009720
    Consensus CDS
    CCDS23406.1
    UniProtKB/TrEMBL
    Q3V0U0
    Related
    ENSMUSP00000096077.2, ENSMUST00000098477.8
    Conserved Domains (1) summary
    cl02043
    Location:9222
    LOR; LURP-one-related

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    92191379..92239929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242838.2XP_011241140.1  uncharacterized protein LOC78459 isoform X2

    See identical proteins and their annotated locations for XP_011241140.1

    Conserved Domains (1) summary
    cl02043
    Location:1199
    LOR; LURP-one-related
  2. XM_011242837.2XP_011241139.1  uncharacterized protein LOC78459 isoform X1

    See identical proteins and their annotated locations for XP_011241139.1

    UniProtKB/TrEMBL
    Q3V0U0
    Conserved Domains (1) summary
    cl02043
    Location:9222
    LOR; LURP-one-related
  3. XM_011242839.1XP_011241141.1  uncharacterized protein LOC78459 isoform X2

    See identical proteins and their annotated locations for XP_011241141.1

    Conserved Domains (1) summary
    cl02043
    Location:1199
    LOR; LURP-one-related

RNA

  1. XR_001779073.1 RNA Sequence