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1700054A03Rik RIKEN cDNA 1700054A03 gene [ Mus musculus (house mouse) ]

Gene ID: 78457, updated on 8-Feb-2024

Summary

Official Symbol
1700054A03Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700054A03 geneprovided by MGI
Primary source
MGI:MGI:1925707
See related
Ensembl:ENSMUSG00000099988 AllianceGenome:MGI:1925707
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 6.1) See more
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Genomic context

Location:
19; 19 D2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (53064683..53072823)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (53076252..53084392)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene X-prolyl aminopeptidase (aminopeptidase P) 1, soluble Neighboring gene STARR-positive B cell enhancer ABC_E7671 Neighboring gene STARR-seq mESC enhancer starr_46426 Neighboring gene microRNA 6407 Neighboring gene predicted gene, 54048 Neighboring gene STARR-seq mESC enhancer starr_46431 Neighboring gene STARR-seq mESC enhancer starr_46433 Neighboring gene predicted gene, 30234 Neighboring gene STARR-seq mESC enhancer starr_46435 Neighboring gene predicted gene, 41862 Neighboring gene STARR-seq mESC enhancer starr_46437 Neighboring gene predicted gene, 30381

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045320.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136730, AC163221, AK018858
    Related
    ENSMUST00000187368.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    53064683..53072823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)