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Fam131a family with sequence similarity 131, member A [ Mus musculus (house mouse) ]

Gene ID: 78408, updated on 5-Mar-2024

Summary

Official Symbol
Fam131aprovided by MGI
Official Full Name
family with sequence similarity 131, member Aprovided by MGI
Primary source
MGI:MGI:1925658
See related
Ensembl:ENSMUSG00000050821 AllianceGenome:MGI:1925658
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2900046G09Rik
Summary
Is expressed in central nervous system and retina. Orthologous to human FAM131A (family with sequence similarity 131 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 51.7), frontal lobe adult (RPKM 40.8) and 12 other tissues See more
Orthologs
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Genomic context

See Fam131a in Genome Data Viewer
Location:
16 A3; 16 12.5 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (20511856..20521794)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (20693094..20703044)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene Neighboring gene eukaryotic translation initiation factor 4, gamma 1 Neighboring gene small nucleolar RNA, C/D box 66 Neighboring gene STARR-seq mESC enhancer starr_40329 Neighboring gene chloride channel, voltage-sensitive 2 Neighboring gene STARR-positive B cell enhancer ABC_E1489 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide H Neighboring gene STARR-seq mESC enhancer starr_40331 Neighboring gene thrombopoietin Neighboring gene chordin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133778.2NP_598539.1  protein FAM131A

    See identical proteins and their annotated locations for NP_598539.1

    Status: PROVISIONAL

    Source sequence(s)
    AK049983
    Consensus CDS
    CCDS28056.1
    UniProtKB/Swiss-Prot
    Q8BWU3, Q99KY5
    Related
    ENSMUSP00000060194.7, ENSMUST00000056518.13
    Conserved Domains (1) summary
    pfam15010
    Location:86356
    FAM131; Putative cell signalling

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    20511856..20521794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249332.2XP_030105192.1  protein FAM131A isoform X4

    Related
    ENSMUSP00000156118.2, ENSMUST00000232207.2
    Conserved Domains (1) summary
    pfam15010
    Location:1133
    FAM131; Putative cell signalling
  2. XM_006522741.5XP_006522804.1  protein FAM131A isoform X3

    See identical proteins and their annotated locations for XP_006522804.1

    UniProtKB/TrEMBL
    D3Z4E4
    Conserved Domains (1) summary
    pfam15010
    Location:1271
    FAM131; Putative cell signalling
  3. XM_006522740.5XP_006522803.1  protein FAM131A isoform X3

    See identical proteins and their annotated locations for XP_006522803.1

    UniProtKB/TrEMBL
    D3Z4E4
    Related
    ENSMUSP00000113719.2, ENSMUST00000118919.9
    Conserved Domains (1) summary
    pfam15010
    Location:1271
    FAM131; Putative cell signalling
  4. XM_017317161.3XP_017172650.1  protein FAM131A isoform X2

    Conserved Domains (1) summary
    pfam15010
    Location:86218
    FAM131; Putative cell signalling
  5. XM_006522738.5XP_006522801.1  protein FAM131A isoform X1

    Conserved Domains (1) summary
    pfam15010
    Location:77347
    FAM131; Putative cell signalling
  6. XM_006522742.5XP_006522805.1  protein FAM131A isoform X3

    See identical proteins and their annotated locations for XP_006522805.1

    UniProtKB/TrEMBL
    D3Z4E4
    Conserved Domains (1) summary
    pfam15010
    Location:1271
    FAM131; Putative cell signalling