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Lce6a late cornified envelope 6A [ Mus musculus (house mouse) ]

Gene ID: 78382, updated on 5-Mar-2024

Summary

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Official Symbol
Lce6aprovided by MGI
Official Full Name
late cornified envelope 6Aprovided by MGI
Primary source
MGI:MGI:1925632
See related
Ensembl:ENSMUSG00000086848 AllianceGenome:MGI:1925632
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210420J11Rik
Summary
Orthologous to human LCE6A (late cornified envelope 6A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in stomach adult (RPKM 1.4), testis adult (RPKM 0.5) and 4 other tissues See more
Orthologs
human all
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Genomic context

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See Lce6a in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92512128..92528975, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92604821..92621660, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35639 Neighboring gene involucrin Neighboring gene sperm mitochondria-associated cysteine-rich protein Neighboring gene predicted gene, 35699 Neighboring gene late cornified envelope 1A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia. Carninci P, et al. Genome Res, 2003 Jun. PMID 12819125, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
late cornified envelope protein 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166172.2 → NP_001159644.1  late cornified envelope protein 6A

    See identical proteins and their annotated locations for NP_001159644.1

    Status: VALIDATED

    Source sequence(s)
    AC132234
    Consensus CDS
    CCDS50976.1
    UniProtKB/TrEMBL
    D3YV94
    Related
    ENSMUSP00000114595.2, ENSMUST00000138403.2
    Conserved Domains (1) summary
    pfam15858
    Location:1 → 81
    LCE6A; Late cornified envelope protein 6A family

  2. NM_001399689.1 → NP_001386618.1  late cornified envelope protein 6A

    Status: VALIDATED

    Source sequence(s)
    AC132234
    UniProtKB/TrEMBL
    D3YV94
    Related
    ENSMUSP00000128725.3, ENSMUST00000170676.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92512128..92528975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006502319.3 → XP_006502382.1  late cornified envelope protein 6A isoform X1

    See identical proteins and their annotated locations for XP_006502382.1

    UniProtKB/TrEMBL
    D3YV94
    Conserved Domains (1) summary
    pfam15858
    Location:1 → 81
    LCE6A; Late cornified envelope protein 6A family

  2. XM_006502320.2 → XP_006502383.1  late cornified envelope protein 6A isoform X1

    See identical proteins and their annotated locations for XP_006502383.1

    UniProtKB/TrEMBL
    D3YV94
    Conserved Domains (1) summary
    pfam15858
    Location:1 → 81
    LCE6A; Late cornified envelope protein 6A family
Nucleotide Protein Strain
Heading Accession and Version

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