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1810041H14Rik RIKEN cDNA 1810041H14 gene [ Mus musculus (house mouse) ]

Gene ID: 78312, updated on 8-Feb-2024

Summary

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Official Symbol
1810041H14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1810041H14 geneprovided by MGI
Primary source
MGI:MGI:1925562
See related
Ensembl:ENSMUSG00000102112 AllianceGenome:MGI:1925562
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 3.0), liver E18 (RPKM 1.1) and 21 other tissues See more
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Genomic context

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Location:
14; 14 E5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (122114223..122116820, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (121876811..121879408, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 9 Neighboring gene STARR-positive B cell enhancer ABC_E7355 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122197085-122197385 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122197667-122197968 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122223986-122224286 Neighboring gene STARR-seq mESC enhancer starr_37739 Neighboring gene predicted gene 9395 Neighboring gene STARR-positive B cell enhancer ABC_E10843 Neighboring gene STARR-positive B cell enhancer ABC_E9906 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122277628-122277929 Neighboring gene STARR-positive B cell enhancer ABC_E11585 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122306628-122306928 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122309024-122309325 Neighboring gene STARR-positive B cell enhancer ABC_E7358 Neighboring gene ubiquitin associated domain containing 2 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122327665-122327966 Neighboring gene STARR-positive B cell enhancer ABC_E8579 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122337770-122338071 Neighboring gene predicted gene, 46485 Neighboring gene G protein-coupled receptor 18 Neighboring gene STARR-positive B cell enhancer mm9_chr14:122364300-122364601 Neighboring gene G protein-coupled receptor 183

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. Aboudehen K, et al. J Biol Chem, 2018 Jun 15. PMID 29716997, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130999.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate first exon in place of that of variant 1.
    Source sequence(s)
    BY707761

  2. NR_131000.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC165155
    Related
    ENSMUST00000187773.3

  3. NR_131002.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate first exon in place of that of variant 1.
    Source sequence(s)
    AC165155

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    122114223..122116820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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