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Sowahb sosondowah ankyrin repeat domain family member B [ Mus musculus (house mouse) ]

Gene ID: 78088, updated on 21-Apr-2024

Summary

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Official Symbol
Sowahbprovided by MGI
Official Full Name
sosondowah ankyrin repeat domain family member Bprovided by MGI
Primary source
MGI:MGI:1925338
See related
Ensembl:ENSMUSG00000045314 AllianceGenome:MGI:1925338
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ankrd56; 5730467H21Rik
Summary
Is expressed in embryo endoderm; eye; inner ear; and trunk somite. Orthologous to human SOWAHB (sosondowah ankyrin repeat domain family member B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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Location:
5 E2; 5 47.29 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (93188981..93192910, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (93041123..93045022, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13662 Neighboring gene predicted gene, 25521 Neighboring gene STARR-seq mESC enhancer starr_13663 Neighboring gene predicted gene, 52780 Neighboring gene predicted gene, 22915 Neighboring gene septin 11 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:93522357-93522466 Neighboring gene STARR-seq mESC enhancer starr_13664 Neighboring gene VISTA enhancer mm39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiplex Chromosomal Exome Sequencing Accelerates Identification of ENU-Induced Mutations in the Mouse. Sun M, et al. G3 (Bethesda), 2012 Jan. PMID 22384391, Free PMC Article
  2. Prospective isolation and global gene expression analysis of definitive and visceral endoderm. Sherwood RI, et al. Dev Biol, 2007 Apr 15. PMID 17328885
  3. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein SOWAHB
Names
ankyrin repeat domain 56
ankyrin repeat domain-containing protein 56
protein sosondowah homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175270.5 → NP_780479.1  ankyrin repeat domain-containing protein SOWAHB

    See identical proteins and their annotated locations for NP_780479.1

    Status: VALIDATED

    Source sequence(s)
    AC125233
    Consensus CDS
    CCDS19435.1
    UniProtKB/Swiss-Prot
    Q8BZS7, Q8BZW2
    Related
    ENSMUSP00000055267.6, ENSMUST00000061328.6
    Conserved Domains (3) summary
    cd00204
    Location:597 → 674
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam13637
    Location:598 → 657
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:598 → 634
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    93188981..93192910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BZW2.1 GenPept UniProtKB/Swiss-Prot:Q8BZW2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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