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4930595D18Rik RIKEN cDNA 4930595D18 gene [ Mus musculus (house mouse) ]

Gene ID: 78062, updated on 8-Feb-2024

Summary

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Official Symbol
4930595D18Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930595D18 geneprovided by MGI
Primary source
MGI:MGI:1925312
See related
Ensembl:ENSMUSG00000083193 AllianceGenome:MGI:1925312
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 2.4), spleen adult (RPKM 0.2) and 2 other tissues See more
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Genomic context

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Location:
12 F1; 12 60.94 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (111126284..111150925, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (111159850..111184491, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:112276930-112277113 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:112277230-112277417 Neighboring gene STARR-positive B cell enhancer mm9_chr12:112283133-112283433 Neighboring gene predicted gene, 35846 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:112310033-112310280 Neighboring gene REST corepressor 1 Neighboring gene STARR-positive B cell enhancer ABC_E7184 Neighboring gene DNA repair protein SWI5 homolog pseudogene Neighboring gene VISTA enhancer mm3 Neighboring gene STARR-positive B cell enhancer mm9_chr12:112398161-112398462 Neighboring gene STARR-positive B cell enhancer ABC_E7186 Neighboring gene TNF receptor-associated factor 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:112477093-112477276 Neighboring gene RIKEN cDNA A230087F16 gene Neighboring gene predicted gene, 51960 Neighboring gene CDC42 binding protein kinase beta Neighboring gene amnionless

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130987.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK019842
    Related
    ENSMUST00000121608.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    111126284..111150925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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