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Ccdc150 coiled-coil domain containing 150 [ Mus musculus (house mouse) ]

Gene ID: 78016, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc150provided by MGI
Official Full Name
coiled-coil domain containing 150provided by MGI
Primary source
MGI:MGI:1925266
See related
Ensembl:ENSMUSG00000025983 AllianceGenome:MGI:1925266
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930511H11Rik
Summary
Orthologous to human CCDC150 (coiled-coil domain containing 150). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 5.1) and CNS E11.5 (RPKM 0.3) See more
Orthologs
human all
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Genomic context

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Location:
1 C1.1; 1 27.06 cM
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (54289820..54407893)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (54250661..54368727)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:53951535-53951718 Neighboring gene STARR-positive B cell enhancer ABC_E9464 Neighboring gene predicted gene, 24251 Neighboring gene STARR-seq mESC enhancer starr_00927 Neighboring gene STARR-seq mESC enhancer starr_00928 Neighboring gene STARR-seq mESC enhancer starr_00929 Neighboring gene STARR-seq mESC enhancer starr_00930 Neighboring gene STARR-seq mESC enhancer starr_00931 Neighboring gene STARR-seq mESC enhancer starr_00932 Neighboring gene predicted gene, 51622 Neighboring gene predicted gene, 25829 Neighboring gene STARR-seq mESC enhancer starr_00933 Neighboring gene STARR-seq mESC enhancer starr_00934 Neighboring gene STARR-seq mESC enhancer starr_00935 Neighboring gene general transcription factor IIIC, polypeptide 3 Neighboring gene predicted gene, 34066

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 150

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030025.3 → NP_084301.2  coiled-coil domain-containing protein 150

    See identical proteins and their annotated locations for NP_084301.2

    Status: VALIDATED

    Source sequence(s)
    AC124175, AC124538
    Consensus CDS
    CCDS35564.1
    UniProtKB/Swiss-Prot
    E9QMC0, Q8CDI7
    Related
    ENSMUSP00000027128.5, ENSMUST00000027128.11
    Conserved Domains (3) summary
    COG3883
    Location:456 → 675
    CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
    pfam00038
    Location:733 → 1005
    Filament; Intermediate filament protein
    cl09914
    Location:758 → 898
    PHA_synth_III_E; Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)

RNA

  1. NR_182040.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124175, AC124538
    Related
    ENSMUST00000160472.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    54289820..54407893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312896.1 → XP_017168385.1  coiled-coil domain-containing protein 150 isoform X1

    Conserved Domains (1) summary
    COG1196
    Location:214 → 1027
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_006496332.1 → XP_006496395.1  coiled-coil domain-containing protein 150 isoform X3

    Conserved Domains (1) summary
    COG1196
    Location:214 → 1024
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_017312900.1 → XP_017168389.1  coiled-coil domain-containing protein 150 isoform X4

    Conserved Domains (2) summary
    COG5022
    Location:161 → 464
    COG5022; Myosin heavy chain [General function prediction only]
    TIGR02168
    Location:382 → 1009
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_017312903.1 → XP_017168392.1  coiled-coil domain-containing protein 150 isoform X7

    Conserved Domains (1) summary
    COG1196
    Location:83 → 845
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_030243620.1 → XP_030099480.1  coiled-coil domain-containing protein 150 isoform X6

    Conserved Domains (1) summary
    COG1196
    Location:153 → 915
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_030243616.1 → XP_030099476.1  coiled-coil domain-containing protein 150 isoform X5

    Conserved Domains (2) summary
    COG1196
    Location:153 → 915
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:807 → 1042
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_006496341.3 → XP_006496404.1  coiled-coil domain-containing protein 150 isoform X14

    UniProtKB/TrEMBL
    E9Q7E1
    Conserved Domains (1) summary
    COG1196
    Location:214 → 551
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_017312918.1 → XP_017168407.1  coiled-coil domain-containing protein 150 isoform X10

    UniProtKB/TrEMBL
    E9Q7E1
    Conserved Domains (1) summary
    COG1196
    Location:214 → 551
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  9. XM_036154406.1 → XP_036010299.1  coiled-coil domain-containing protein 150 isoform X13

    UniProtKB/TrEMBL
    E9Q7E1
    Conserved Domains (1) summary
    COG1196
    Location:214 → 551
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  10. XM_017312916.1 → XP_017168405.1  coiled-coil domain-containing protein 150 isoform X9

    UniProtKB/TrEMBL
    E9Q7E1
    Conserved Domains (1) summary
    COG1196
    Location:214 → 551
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  11. XM_017312920.2 → XP_017168409.1  coiled-coil domain-containing protein 150 isoform X11

    UniProtKB/TrEMBL
    E9Q7E1
    Conserved Domains (1) summary
    COG1196
    Location:214 → 551
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  12. XM_017312898.1 → XP_017168387.1  coiled-coil domain-containing protein 150 isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:132 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  13. XM_017312907.1 → XP_017168396.1  coiled-coil domain-containing protein 150 isoform X8

    Conserved Domains (1) summary
    TIGR02168
    Location:170 → 797
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  14. XM_017312906.1 → XP_017168395.1  coiled-coil domain-containing protein 150 isoform X8

    Conserved Domains (1) summary
    TIGR02168
    Location:170 → 797
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  15. XM_017312913.2 → XP_017168402.1  coiled-coil domain-containing protein 150 isoform X8

    Conserved Domains (1) summary
    TIGR02168
    Location:170 → 797
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  16. XM_006496340.3 → XP_006496403.1  coiled-coil domain-containing protein 150 isoform X12

    See identical proteins and their annotated locations for XP_006496403.1

    UniProtKB/TrEMBL
    A0A571BEL4
    Related
    ENSMUSP00000158733.2, ENSMUST00000163072.8
    Conserved Domains (2) summary
    COG1196
    Location:262 → 553
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:118 → 395
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RNA

  1. XR_001778458.1 RNA Sequence

  2. XR_001778457.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CDI7.2 GenPept UniProtKB/Swiss-Prot:Q8CDI7

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