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Shisal2b shisa like 2B [ Mus musculus (house mouse) ]

Gene ID: 77803, updated on 5-Mar-2024

Summary

Official Symbol
Shisal2bprovided by MGI
Official Full Name
shisa like 2Bprovided by MGI
Primary source
MGI:MGI:1925053
See related
Ensembl:ENSMUSG00000042655 AllianceGenome:MGI:1925053
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam159b; A930021C24Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISAL2B (shisa like 2B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
13 D1; 13 56.87 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (104981791..105000401, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (104845283..104863893, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene CWC27 spliceosome-associated protein Neighboring gene predicted gene, 53810 Neighboring gene STARR-positive B cell enhancer mm9_chr13:105580054-105580355 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:105607138-105607403 Neighboring gene STARR-seq mESC enhancer starr_35542 Neighboring gene splicing regulatory glutamine/lysine-rich protein 1interacting protein 1 Neighboring gene STARR-seq mESC enhancer starr_35543 Neighboring gene STARR-seq mESC enhancer starr_35545 Neighboring gene STARR-positive B cell enhancer ABC_E11556 Neighboring gene predicted gene, 41048 Neighboring gene H3 histone, family 3 pseudogene Neighboring gene regulator of G-protein signalling 7 binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein shisa-like-2B
Names
family with sequence similarity 159, member B
membrane protein FAM159B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029984.1NP_084260.1  protein shisa-like-2B

    See identical proteins and their annotated locations for NP_084260.1

    Status: PROVISIONAL

    Source sequence(s)
    AK042897
    Consensus CDS
    CCDS26754.1
    UniProtKB/Swiss-Prot
    Q9D1Y9
    Related
    ENSMUSP00000042302.5, ENSMUST00000043061.5
    Conserved Domains (1) summary
    pfam13908
    Location:889
    Shisa; Wnt and FGF inhibitory regulator

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    104981791..105000401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)