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Gata3un Gata3 upstream neighbor [ Mus musculus (house mouse) ]

Gene ID: 77682, updated on 8-Feb-2024

Summary

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Official Symbol
Gata3unprovided by MGI
Official Full Name
Gata3 upstream neighborprovided by MGI
Primary source
MGI:MGI:1924932
See related
Ensembl:ENSMUSG00000079602 AllianceGenome:MGI:1924932
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
linc_Gata3; 9230102O04Rik
Summary
Located in basal dendrite. Is expressed in several structures, including central nervous system; heart; hemolymphoid system gland; inner ear; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in bladder adult (RPKM 9.8), testis adult (RPKM 9.1) and 6 other tissues See more
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Genomic context

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Location:
2 A1; 2 6.71 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (9887852..9894351, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (9883041..9889540, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:9515681-9515868 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:9517012-9517347 Neighboring gene STARR-seq mESC enhancer starr_03623 Neighboring gene distal regulatory enhancer RNA of Gata3 Neighboring gene STARR-seq mESC enhancer starr_03624 Neighboring gene STARR-seq mESC enhancer starr_03625 Neighboring gene STARR-seq mESC enhancer starr_03626 Neighboring gene predicted gene, 54101 Neighboring gene STARR-seq mESC enhancer starr_03630 Neighboring gene GATA binding protein 3 Neighboring gene STARR-seq mESC enhancer starr_03633 Neighboring gene STARR-seq mESC enhancer starr_03634 Neighboring gene GATA binding protein 3 opposite strand Neighboring gene predicted gene 13262 Neighboring gene predicted gene, 31290 Neighboring gene TATA-box binding protein associated factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mouse knockout models reveal largely dispensable but context-dependent functions of lncRNAs during development. Han X, et al. J Mol Cell Biol, 2018 Apr 1. PMID 29420831
  2. Genome-wide identification and expression profiling of long non-coding RNAs in auditory and vestibular systems. Ushakov K, et al. Sci Rep, 2017 Aug 17. PMID 28819115, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in basal dendrite IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040511.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK020309, AL928704
    Related
    ENSMUST00000125091.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    9887852..9894351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases