U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

9430038I01Rik RIKEN cDNA 9430038I01 gene [ Mus musculus (house mouse) ]

Gene ID: 77252, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
9430038I01Rikprovided by MGI
Official Full Name
RIKEN cDNA 9430038I01 geneprovided by MGI
Primary source
MGI:MGI:1924502
See related
Ensembl:ENSMUSG00000040139 AllianceGenome:MGI:1924502
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C10orf143 (chromosome 10 open reading frame 143). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in small intestine adult (RPKM 7.0), duodenum adult (RPKM 5.8) and 27 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
7 F4; 7 82.32 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (136977298..137013972, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (137375569..137412242, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene early B cell factor 3 Neighboring gene STARR-seq mESC enhancer starr_20382 Neighboring gene predicted gene 10578 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:144481070-144481271 Neighboring gene STARR-seq mESC enhancer starr_20383 Neighboring gene nucleolin pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2852 Neighboring gene STARR-seq mESC enhancer starr_20385 Neighboring gene STARR-seq mESC enhancer starr_20386 Neighboring gene STARR-seq mESC enhancer starr_20387 Neighboring gene STARR-seq mESC enhancer starr_20388 Neighboring gene glutaredoxin 3 Neighboring gene STARR-seq mESC enhancer starr_20391 Neighboring gene STARR-positive B cell enhancer ABC_E6613 Neighboring gene RIKEN cDNA 4930570E01 gene Neighboring gene STARR-seq mESC enhancer starr_20392 Neighboring gene predicted gene, 51411

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
  2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (2) 

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein C10orf143 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029886.2 → NP_084162.1  uncharacterized protein C10orf143 homolog

    See identical proteins and their annotated locations for NP_084162.1

    Status: VALIDATED

    Source sequence(s)
    AK020460, AK078159, AV013327, BY148312
    Consensus CDS
    CCDS52424.1
    UniProtKB/Swiss-Prot
    Q9CX25
    UniProtKB/TrEMBL
    G5E8T7
    Related
    ENSMUSP00000070550.7, ENSMUST00000068996.13

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    136977298..137013972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153558.1 → XP_036009451.1  uncharacterized protein C10orf143 homolog isoform X6

  2. XM_030243094.2 → XP_030098954.1  uncharacterized protein C10orf143 homolog isoform X4

    UniProtKB/TrEMBL
    D3YTU4
    Related
    ENSMUSP00000112892.2, ENSMUST00000117404.8

  3. XM_011241949.4 → XP_011240251.1  uncharacterized protein C10orf143 homolog isoform X2

  4. XM_006508331.5 → XP_006508394.1  uncharacterized protein C10orf143 homolog isoform X5

  5. XM_006508329.5 → XP_006508392.1  uncharacterized protein C10orf143 homolog isoform X3

  6. XM_011241948.4 → XP_011240250.1  uncharacterized protein C10orf143 homolog isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CX25.1 GenPept UniProtKB/Swiss-Prot:Q9CX25

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous