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2700099C18Rik RIKEN cDNA 2700099C18 gene [ Mus musculus (house mouse) ]

Gene ID: 77022, updated on 8-Feb-2024

Summary

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Official Symbol
2700099C18Rikprovided by MGI
Official Full Name
RIKEN cDNA 2700099C18 geneprovided by MGI
Gene description
NDC80 homolog, kinetochore complex component pseudogene
Primary source
MGI:MGI:1924272
See related
Ensembl:ENSMUSG00000121491 AllianceGenome:MGI:1924272
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9430041D22Rik
Expression
Broad expression in CNS E11.5 (RPKM 10.9), limb E14.5 (RPKM 6.7) and 16 other tissues See more
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Genomic context

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See 2700099C18Rik in Genome Data Viewer
Location:
17 E5; 17 61.19 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (95057528..95082557)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (94750100..94775129)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9416 Neighboring gene STARR-seq mESC enhancer starr_43640 Neighboring gene predicted gene, 41655 Neighboring gene STARR-seq mESC enhancer starr_43642 Neighboring gene STARR-seq mESC enhancer starr_43643 Neighboring gene STARR-seq mESC enhancer starr_43644 Neighboring gene methyltransferase 4, N6-adenosine Neighboring gene STARR-positive B cell enhancer mm9_chr17:95148921-95149221 Neighboring gene STARR-positive B cell enhancer mm9_chr17:95149244-95149545 Neighboring gene STARR-positive B cell enhancer ABC_E8926 Neighboring gene predicted gene 1976 Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 7 Neighboring gene STARR-positive B cell enhancer mm9_chr17:95233967-95234268 Neighboring gene STARR-positive B cell enhancer mm9_chr17:95235804-95236104 Neighboring gene signal recognition particle 19 kDa protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment. Georgas K, et al. Dev Biol, 2009 Aug 15. PMID 19501082
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • NDC80 homolog, kinetochore complex component pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024720.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK132724
    Related
    ENSMUST00000182402.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    95057528..95082557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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