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2810429I04Rik RIKEN cDNA 2810429I04 gene [ Mus musculus (house mouse) ]

Gene ID: 76937, updated on 8-Feb-2024

Summary

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Official Symbol
2810429I04Rikprovided by MGI
Official Full Name
RIKEN cDNA 2810429I04 geneprovided by MGI
Primary source
MGI:MGI:1924187
See related
Ensembl:ENSMUSG00000097709 AllianceGenome:MGI:1924187
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700024F13Rik
Summary
Enables miRNA binding activity. Acts upstream of or within cardiac muscle cell proliferation. Is expressed in brain; heart; lung; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E11.5 (RPKM 2.1), CNS E14 (RPKM 1.9) and 11 other tissues See more
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Genomic context

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See 2810429I04Rik in Genome Data Viewer
Location:
13 A1; 13 1.94 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (3528232..3551393)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (3478232..3501393)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16505 Neighboring gene STARR-seq mESC enhancer starr_33477 Neighboring gene STARR-positive B cell enhancer ABC_E5366 Neighboring gene STARR-seq mESC enhancer starr_33478 Neighboring gene STARR-seq mESC enhancer starr_33479 Neighboring gene STARR-seq mESC enhancer starr_33480 Neighboring gene STARR-seq mESC enhancer starr_33481 Neighboring gene STARR-seq mESC enhancer starr_33482 Neighboring gene COX11 homolog, cytochrome c oxidase assembly protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_33483 Neighboring gene STARR-seq mESC enhancer starr_33484 Neighboring gene STARR-positive B cell enhancer ABC_E3071 Neighboring gene predicted gene, 40654 Neighboring gene STARR-positive B cell enhancer ABC_E1159 Neighboring gene GDP dissociation inhibitor 2 Neighboring gene transcription activation suppressor family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The long noncoding RNA NR_045363 involves cardiomyocyte apoptosis and cardiac repair via p53 signal pathway. Chen X, et al. Cell Biol Int, 2020 Sep. PMID 32374467
  2. A long noncoding RNA NR_045363 controls cardiomyocyte proliferation and cardiac repair. Wang J, et al. J Mol Cell Cardiol, 2019 Feb. PMID 30553885
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The long noncoding RNA NR_045363 involves cardiomyocyte apoptosis and cardiac repair via p53 signal pathway.
    Title: The long noncoding RNA NR_045363 involves cardiomyocyte apoptosis and cardiac repair via p53 signal pathway.
  2. NR_045363 is a potent Long noncoding RNA modulator essential for cardiomyocyte proliferation.
    Title: A long noncoding RNA NR_045363 controls cardiomyocyte proliferation and cardiac repair.
Submit: New GeneRIF Correction

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables miRNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cardiac muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015522.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134826

  2. NR_045363.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC134826
    Related
    ENSMUST00000243244.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    3528232..3551393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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