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HAR1B highly accelerated region 1B [ Homo sapiens (human) ]

Gene ID: 768097, updated on 10-Dec-2024

Summary

Official Symbol
HAR1Bprovided by HGNC
Official Full Name
highly accelerated region 1Bprovided by HGNC
Primary source
HGNC:HGNC:33118
See related
Ensembl:ENSG00000231133 MIM:610557; AllianceGenome:HGNC:33118
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HAR1R; LINC00065; NCRNA00065
Expression
Biased expression in testis (RPKM 2.6), brain (RPKM 0.9) and 6 other tissues See more
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Genomic context

See HAR1B in Genome Data Viewer
Location:
20q13.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (63095493..63102319, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64897543..64904921, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (61726845..61733671, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1056 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:61687794-61687994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61690954-61691796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61691797-61692638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61699516-61700022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61700597-61701098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61701099-61701598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13145 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61704121-61704620 Neighboring gene long intergenic non-protein coding RNA 1749 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13146 Neighboring gene highly accelerated region 1A Neighboring gene uncharacterized LOC105372719 Neighboring gene MPRA-validated peak4307 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr20:61751164-61751347 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61753175-61753676 Neighboring gene uncharacterized LOC105376996

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

General gene information

Other Names

  • highly accelerated region 1B (non-protein coding)
  • highly accelerated region 1B (non-protein-coding RNA)
  • human accelerated region 1, reverse
  • long intergenic non-protein coding RNA 65

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003245.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DQ860410
    Related
    ENST00000447910.2
  2. NR_152601.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DQ860411
    Related
    ENST00000608031.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    63095493..63102319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64897543..64904921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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